Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3207g00005 ATGCAGCAAGAGGATATGCAGTCACCATGGTCATTCTTTGAAGGCATGAACTCAACTTTTGAATCAGGTGTTGAGTCCTTGGGTTTCACTGTGTATGACCATGTTGCTGATTGTGGATCCTATGGCTTCACTGTGGATGACCATGTTGCCGATTATGGAGCCTATGGTTTTGCTGTGGATGGTGACCATGTTGATGACTGTGGACTCAATACACTGTTGAGCACTCTAGAGGATTCCACTTCTGAAATTTCCTCCATACCCTTTTCTTCATCCTCTTTATTTTTCTCCAATGATCATGTTCACACCCAATACCCAATCAATGAAGAAACCCTGCAACTTCCATCACTCATGGAATTTGATGATTTTGATTCCATTATGGATACTGAAATTGCTAGTATTCAAGGTCATGGATACATATGGGAGAGCGAAGGGAGCTTCTTCCCTCCACAGAATTTGTCAAGTGAGGTGGAAAATGCTTGGAGTCCTACCCCATCCGTGAGGTCAGAGTTGTCCACAAATCAAGCATCACCATTGACTTTACCTCACCAAAACATGGAAATTGAAAACCAAGTGAGTCTTCCACACTTGCTAGAGGCACACGGAGAGGCCTTGGAGCAAGGACAAAAATCACTGGCAGAAGTGATTTTGAGGTGCATGAGCCAGAAAGCTAGTCCACTAGGTGAGTCTCTAGAACGCCTTGTATTCTACTTGTCTCAGAGCATGACCAATCATGGAGACTATCTCAAAGGTGAGGCCTTCAAGAACTATGAGGCTGCTTTGAGGGCACTCTATCAAGGTCTCCCAGTTGGGAAAGTCGCTCACTTTGCAGCTGTTTCTGCAATTCTTGAAGCCATGCCACAAGACTGTAATAGTGTACACATAGTGGACTCTTGTGTTGGACATGGGTTTCAATGGGTTCCAATGATTGAGGCTATTGCACACATGAACAAAACAGTGAAACTGACATCGATTAAATGGGATGGTGATGGTGAGGGTCTTGAATGTTTTTCAACTCCATCAAATTTTGAGGAAACTAAAAGGCAGCTCTGTGAGTATGCCAAATCCTGTGGTTTGAAGTTGAAGGTAGAGGAGAAAGGAGTGAAGGAACTTGTTGCTGAGATTAAGAAAATGAACAAAAGGGGTGGGAGGGGTGAGTTTTTGGCCTTCAATTCGATGATTGATCTTCCACATATGGGAAGAGAAAGTAGCAGAAAACAAGCCTTAGAGTTTCTAAGGGTAGCTGAAGATCTGATCAACACCTCTGGCAATAGGGGGATTATAACTTTTGGGGATGGAAGTGCTTATGAGAAAGTGAAAAACAACTTGAATTTCAGGTCATTCTTTAAAGCACATTTGGAGCATTACCAAGCCTTGTTAGAAGCAATTGAATCACATTTCCCAACTCGTTTCTCAGAAGCAAGAATTGCCATGGAGCAACTGTTTTTGCAACCTTGTATTTCGTCTCTTGATTGGTTACAAACATGGGAGGAGATGCACAGTGGTGACCCTCTTGAGGCTGAGATTAGCTTTAAGGGTTGCCAATTGAGCAAAAATATTTTGATGGAAATCAGAGAAGTGTTGGGAGGAAGTGAAGGCTCGTATCAAGCAAGGATTGAAGGACAAAATCACAATGAACTGGTTTTGGAGTACAAAGGAACTCAACTGTTAAGATTTTCAACTTGGAAAAACTAA 1692 0.4249 MQQEDMQSPWSFFEGMNSTFESGVESLGFTVYDHVADCGSYGFTVDDHVADYGAYGFAVDGDHVDDCGLNTLLSTLEDSTSEISSIPFSSSSLFFSNDHVHTQYPINEETLQLPSLMEFDDFDSIMDTEIASIQGHGYIWESEGSFFPPQNLSSEVENAWSPTPSVRSELSTNQASPLTLPHQNMEIENQVSLPHLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDYLKGEAFKNYEAALRALYQGLPVGKVAHFAAVSAILEAMPQDCNSVHIVDSCVGHGFQWVPMIEAIAHMNKTVKLTSIKWDGDGEGLECFSTPSNFEETKRQLCEYAKSCGLKLKVEEKGVKELVAEIKKMNKRGGRGEFLAFNSMIDLPHMGRESSRKQALEFLRVAEDLINTSGNRGIITFGDGSAYEKVKNNLNFRSFFKAHLEHYQALLEAIESHFPTRFSEARIAMEQLFLQPCISSLDWLQTWEEMHSGDPLEAEISFKGCQLSKNILMEIREVLGGSEGSYQARIEGQNHNELVLEYKGTQLLRFSTWKN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3207g00005 563 ProSiteProfiles GRAS family profile. 184 562 IPR005202 -
Vium3207g00005 563 Coils Coil 360 380 - -
Vium3207g00005 563 Pfam GRAS domain family 195 562 IPR005202 -
Vium3207g00005 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 535 IPR005202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3207g00005 212 489 GRAS Transcription Factor Family AT5G66770 26.481 5.66e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium3207g00005 GRAS 4.3e-35 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3207g00005 - - gmx:100792407 842.032