Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3207g00004 ATGCCAAAATCTCTCAGCATTATTGGTTTATTATCTCTTATGGCTTCTCAAGCTCTTGTTCTTGTCTTCCTCTTATTTCCCTTTTCCTTACACCAAGTTGTTGCCTCCTCCTCCAATGGTTTGATCTTTGAAGGATTTGATGAAAACAGCGATATAAGCCTTGAAGGATCTTCCATCATCAAAACCAGTCGTTTACTTAAACTCACTAACAGATCAACCAATATTATAGGCCATGCATTCTACAAAACACCCTTCCAAATGCTTAACAAAACAGACCCTCCCCTTGAACCCTCTGCTTTTTCTTTCAGCACCTACTTTGTGTTCTCAATTGTATCCCCTAGTTCTGGTTCTGGGGGCTTTGGCCTTGCCTTCACCATAGCGCCATCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGTCTTTTTAACTCCGCCAATGATGGGAATGACACAAATAACATCTTTGCGGTGGAGTTTGACACTGTAAATGGTTACAAAGGTGACTCGGACAGTGAAGGAAACCATGTTGGGGTGAATATAAATGGAATGGACTCAAGGATTACTGAACCAGCTGCATACATTAAAGAGGGTACTGAGAGTGTAAAGGAGGATTTCAGAATGGCCAAGGTTGATGCTGTCCACGCTTGGATAGAGTATGATGGTGAAAAGAGAATTCTGAATGTAACAATAGCTCCGTGGGAATTATCAAGGCCCAGCACACCACTCATAAAGAATTACAACGTTGACCTTTCCAACGTTATGAAGGAAAACATGTATGTTGGTTTCTCAGCATCGACTGGCCAGGAAACAAGCTCTCATTATCTTCTAGGGTGGAGTTTTGCAGTGAACGGTGTTGCTATGAATTTGTCTAATCTTCCAGAGCCACCACCCAAGGAGGAAGATCCCTCTTCGTTTCCTTGGGTCAATGTTGTAATTGGCATCTTGTCCGCTTTGACTTTGAGCCTTCTGTGTCTTCTAATTCTTCTGACATGTTATAAGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTCAGATACAAAGATCTTCACCTTGCCACAGAAGGGTTCAAAGAGAGCCAACTAATTGGAATTGGAGGCTTTGGTGCTGTGTACAAAGGTGTCTTACCAACTTCAGGAACTGAAGTTGCTGTTAAGAGGATTGTGAGGAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGACACAAGAATTTGGTGAACCTTCAAGGATGGTGCAAGAAAAAGAATGATCTCCTTCTCGTCTATGATTTCATTTCAAATGGAAGCCTTGATTGTGTCCTATATAACCCCAACAACAGCTTTGTCTTGAACTGGGGGCAAAGATTCAACATTCTCAAAGGCATCAGTGCTGGACTATTGTACTTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGACGTGAAAACTAGCAATATTTTGATAGATGGAAACTTGAATGCACGTTTAGGTGACTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTATCACACACAACCAGGGTGGTTGGAACCATTGGCTACATTGCACCAGAGTTAACTCGCACAGGAAAAGCTTCTACAAGAACTGATGTTTATGCATTTGGGGTTGTGCTTCTTGAAGTGGTCACAGGTAAGAGGCCTCTTGATTCAGATCAGTTTTTCTTGGTCGAATGGGCGATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTCAAGTTGGGTTTACTATGCACTCAACGTAGATCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACCTAAACTTTGATGACCCTCTTCCTGATATTGGTGATTTGGGATATGGTGGTTCTAATAGCAGCAGCAGAATGAACTCAGGTTTCTTAGAAGTCACGCCATCTTTGAGAACTGTTGAAACATCTGGGTATCTGTCCTCCATTAGCATGAGTACCAAGTCCTTGGATGCTGGTAGATAG 2073 0.4255 MPKSLSIIGLLSLMASQALVLVFLLFPFSLHQVVASSSNGLIFEGFDENSDISLEGSSIIKTSRLLKLTNRSTNIIGHAFYKTPFQMLNKTDPPLEPSAFSFSTYFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLFNSANDGNDTNNIFAVEFDTVNGYKGDSDSEGNHVGVNINGMDSRITEPAAYIKEGTESVKEDFRMAKVDAVHAWIEYDGEKRILNVTIAPWELSRPSTPLIKNYNVDLSNVMKENMYVGFSASTGQETSSHYLLGWSFAVNGVAMNLSNLPEPPPKEEDPSSFPWVNVVIGILSALTLSLLCLLILLTCYKRYMDFEVLEDWEMDCPHRFRYKDLHLATEGFKESQLIGIGGFGAVYKGVLPTSGTEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFISNGSLDCVLYNPNNSFVLNWGQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDGNLNARLGDFGLARLYNHGQVSHTTRVVGTIGYIAPELTRTGKASTRTDVYAFGVVLLEVVTGKRPLDSDQFFLVEWAIENYHLGQILEVVDPKLNSVYDEEEVELVLKLGLLCTQRRSDYRPTMKQVTRYLNFDDPLPDIGDLGYGGSNSSSRMNSGFLEVTPSLRTVETSGYLSSISMSTKSLDAGR 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3207g00004 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Vium3207g00004 690 Pfam Protein kinase domain 366 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3207g00004 690 FunFam Lectin-domain containing receptor kinase VI.3 351 442 - -
Vium3207g00004 690 CDD STKc_IRAK 372 634 - -
Vium3207g00004 690 ProSiteProfiles Protein kinase domain profile. 366 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3207g00004 690 SMART serkin_6 366 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3207g00004 690 SUPERFAMILY Protein kinase-like (PK-like) 349 635 IPR011009 -
Vium3207g00004 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 295 IPR013320 -
Vium3207g00004 690 CDD lectin_legume_LecRK_Arcelin_ConA 42 286 IPR001220 GO:0030246
Vium3207g00004 690 Gene3D Phosphorylase Kinase; domain 1 351 442 - -
Vium3207g00004 690 FunFam L-type lectin-domain containing receptor kinase V.9 37 290 - -
Vium3207g00004 690 PANTHER - 32 635 - -
Vium3207g00004 690 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
Vium3207g00004 690 Pfam Legume lectin domain 42 292 IPR001220 GO:0030246
Vium3207g00004 690 FunFam L-type lectin-domain containing receptor kinase S.4 443 644 - -
Vium3207g00004 690 Gene3D Transferase(Phosphotransferase) domain 1 443 640 - -
Vium3207g00004 690 Gene3D - 41 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3207g00004 Vium-Chr3207 81058 83237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3207g00004 33 653 Receptor kinase-like Gene Family AT3G08870 50.869 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium3207g00004 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3207g00004 - - gmx:100802724 1106.28