Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3207g00001 ATGAGGATGGAAGAAGAGAGACACGTCTCAGAATGTTCCAAGACAAGTCCTTCCAATGAAGAAGGTTGTGAAGAGAGTGAAGAGGAGAATGAAGATGAGAGTAAGCAGAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGGCAACAGTGAGACCTTATGTTAGATCCAAGTTGCCTCGTCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGGCAAATCAAGTATTGGGTGATCCTAGGCTCCTAGTAGAAACTGGAGACAGAAACGTTTACAATCTCAGCCAAATTCCCATTCTTCAAGGCTACAATCCAACCCAAACTTCAGCATACAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGAAAACTTGCATGAATAGGAGTTCGGTTGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTGACTGAGAGAATTCATGGAACCAATAGTAACATGAATTGGAGTCATAATGTACTCCAAGTTGATTGTTCTTCCGGTTTCAATGAATCCTTCTGCAGACCAATCAAAATGAACCAAGAAGATCCTCATCAATCTACAGAATTAATGCAGCCAAGTGCACAAGAACTCATGCCAAACAATGATATTGCTTCAAAAAATCTGGTGGAACTAAAGAGCTTGAAAAGGAAGGCTTCAGATTCTGACATTGATTTGAATCTGTCACTTAAATTAAGTTCAAGGGTCAGTGACGAGAAGCATGGAAGCATGGTGGAGCATGAAATTGATAGCAATCTATCACTGTCTTTGTGTTCTCAATCCTCCTCCTCTTATAATCTCAGCAGCAGGTTGAGAAAATCATCACAAGATCATTCTAAGGAGCAAGGGGAAAGAGGCAGAACATTGGATCTCACTATATGA 1050 0.4114 MRMEEERHVSECSKTSPSNEEGCEESEEENEDESKQNNNGGSSSNSTVEENEKKATVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEANQVLGDPRLLVETGDRNVYNLSQIPILQGYNPTQTSAYRYGYGDASLAIYENMVKTCMNRSSVDESGAEFCGSRLTERIHGTNSNMNWSHNVLQVDCSSGFNESFCRPIKMNQEDPHQSTELMQPSAQELMPNNDIASKNLVELKSLKRKASDSDIDLNLSLKLSSRVSDEKHGSMVEHEIDSNLSLSLCSQSSSSYNLSSRLRKSSQDHSKEQGERGRTLDLTI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3207g00001 349 MobiDBLite consensus disorder prediction 1 21 - -
Vium3207g00001 349 MobiDBLite consensus disorder prediction 329 343 - -
Vium3207g00001 349 MobiDBLite consensus disorder prediction 1 58 - -
Vium3207g00001 349 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
Vium3207g00001 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 42 226 IPR046955 GO:0003700
Vium3207g00001 349 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Vium3207g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Vium3207g00001 349 FunFam Myb family transcription factor 64 122 - -
Vium3207g00001 349 MobiDBLite consensus disorder prediction 324 349 - -
Vium3207g00001 349 Gene3D - 65 123 - -
Vium3207g00001 349 MobiDBLite consensus disorder prediction 36 50 - -
Vium3207g00001 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3207g00001 Vium-Chr3207 3851 5847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3207g00001 57 149 G2-like Transcription Factor Family AT2G42660 56.881 6.26e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium3207g00001 Myb_DNA-binding 9.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3207g00001 - - gmx:102662997 458.759