Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3202g00007 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACGCCAACAAGAGGCCGTCTTCTTCTGACGACAAAACTCCCTCCCCTTCCCCCAAGCGCCAAAAGGTCGACAATGTTGCTGCCGCCTCGGAGAAACCGATGCCGCCGGCGGAAAATTCCAAGGATTTGGGCATGCGGGAGCCTCCCGCTGATCCCGGAGAATGCGAATCTCGAGACGCTCAGATCGCCGGTGACGTCAATCCAGACGGCAAGGCGGATCCCACGCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTTGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGGCTATATATCAGAAGCAAAACCCGAATTTCGAGGCTTCAGTTCCCTGGTGCAGACTCTTGTCTCAATCTGCGCAGAATCCCAATGTTTTAATTTGCACACCCAACTTTACTATTGGGTCTAGTAGGGGTTGCAATTTCCCGTTGAAGGACCAGACTATAAGTGGAAATTTGTGCAAGATCAAACACACGCAGCGCGAGGGAAGTGCTGTGGCCGTGCTAGAAAGTACGGGTAGCAAAGGATCGGTGGTAGTGAATGGCACGCTCCTCAAGAAGAGTACCAGTTATGTGCTTAACTCGGGGGACGAGGTGATTTTTGGTTTGATTGGGAATCATTCTTATATTTTTCAGCAAATAAATCCTGAAGTTGCAGTTAAGGCTGCAGAAATTCAGGGTGGTGTCAGCAAGTTTTTCCAGATTGAAAGGAGGGCTGGAGACCCTTCAGCCGTTGCTGGAGCTTCTATTCTGGCTTCTCTTTCTAGCCTCAGACCGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCTGGTAAACCTATTCAGGGTACTGATGTTCCTAGTCATTCTGTTCTCCCTGATGGTACAGAGACCGGGCTCGAAGGTGTGGAAGGCAACTCTGTTCCAAATATAGCGACAGATAAAGCTGCTGATGTTGGAGCAAGTGACAAGAATTTGCCTATGGATTGCGATTCAGATGATGCTGGCACAGAGGCAGGCAATGTAAAAATCTCTGGGGTATTCGAAGAAAGACATGGGACGAGGGATGTGCAAGCTGCATCGACTTCGGGTACTTCTGTTCGCAGTGCAGTTTTTAAAGAGGATGTTCATGCTGCAATACTTGATAGGAATGAAATAGAAGTGTCCTTTGACAACTTCCCTTACTACTTAAGTGAGAATACAAAAAATGTACTTCGAGTGAAGCATAGACAACATGGAAAGTAAACCACAAATCTTGCAACCATAAACCCTCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGCTGGCAAAAGCACTTGCGAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTTTAACTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTGGTGCTGATAAATCCTGTGGCTGTGCTAAACAAAGTCCTTTAACTACAGACATGGCTGGGAGCATGGATCCACCAGTTAGTGAACCAGAGACACAGAACTCCTCAAATGCACCTACTCCATGTGGTTTTGAGTCTCAACTTAAGTTTGAAGCTGATAATTTACCATCTACATCTGGGGCATCTAAAACTTGTGTGTTTAAACTAGGTGACAGGGTAAAATACAGTTCATATTCTGGGGGAATATATCAGCTTCAGACAATTTCTACAAGGGGTCCACCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTCGATGATAATCCTTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGACCTTGGAGGTTGCTGTGAGGGTGGTCAAGGATTTTTCTGCCATGTGAATGATCTTCGGTTGGAAAACAGTGGCATTGAAGAACTTGACAAATTACTCATTAATACATTATTTGAGGTTGTGGTCAGTGAGAGCAGAAATGAACCCTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAACGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAACGTGGTGGTAATAGGTTCACATACTCACACTGACAGTCGCAAAGAGAAGTCACATCCTGGGGGTTTACTTTTTACGAAGTTTGGCAGTAATCAGACGGCTCTTCTTGATTTGGCTTTCCCCGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGTCCCAAAGCCGAACAAAACCTTAACTAAACTTTTCCCGAATAAAGTGACAATTCACATGCCACAGGATGAAGTACTTCTAGCATCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAATTTACGTTCTGTTTTGAGCCGTTGTGGGGTGGAATGTGAAGGGCTTGAATCCTTGTGCATTAAGGATCAAACACTTAGTATTGAAAATGCAGAGAAGATTGTTGGTTGGGCTATAAGCCGACATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGCATCTTACAGTCTATCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGAGGATATTGGAGCTCTTGAAAACGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGTTATTTTGCAAAGGGCAATTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCTCCTGGAACAGGCAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCGAGTATCACATCTAAGTGGTTTGGTGAGGGCGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGAAGGATACTGAGAGAGTTCTGGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGCTGCCTCGGAGGTTAATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTCATACTGGCAAAAGAAGATTTGTCTTCTGGTCTTGATTTGAATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATTTGTGTGTAACTGCTGCACATTGTCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAACAGGCTGCTGCTCTGGCAGAAGGTAGACCTGCTCCAGCAATAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAGTATGCTCATCAACAGGTGTGTGCAAGCGTTTCCTCTGAATCCGTAAATATGACGGAGCTTCAACAATGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAGAACATTAAGCTATTTCATGTGA 3609 0.4383 MVSTRRNSGSFSNANKRPSSSDDKTPSPSPKRQKVDNVAAASEKPMPPAENSKDLGMREPPADPGECESRDAQIAGDVNPDGKADPTPPIADGSTPTVVADKPRGSFSSWAIYQKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRGCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVVVNGTLLKKSTSYVLNSGDEVIFGLIGNHSYIFQQINPEVAVKAAEIQGGVSKFFQIERRAGDPSAVAGASILASLSSLRPDLTRWKSPSQTAGKPIQGTDVPSHSVLPDGTETGLEGVEGNSVPNIATDKAADVGASDKNLPMDCDSDDAGTEAGNVKISGVFEERHGTRDVQAASTSGTSVRSAVFKEDVHAAILDRNEIEVSFDNFPYYLSENTKNVLXRVKHRQHGKXTTNLATINPRILLSGPAGSEIYQEMLAKALAKHFGAKLLIFDSHSLLGGLTSKEAELLKDGFGADKSCGCAKQSPLTTDMAGSMDPPVSEPETQNSSNAPTPCGFESQLKFEADNLPSTSGASKTCVFKLGDRVKYSSYSGGIYQLQTISTRGPPNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGCCEGGQGFFCHVNDLRLENSGIEELDKLLINTLFEVVVSESRNEPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEVLLASWKQQLDRDVETLKIKGNLHNLRSVLSRCGVECEGLESLCIKDQTLSIENAEKIVGWAISRHLMQNAETDPDAKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSGLDLNAIASMTDGYSGSDLKNLCVTAAHCPIKEILEKEKKEQAAALAEGRPAPAISGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRTLSYFM 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3202g00007 1203 SUPERFAMILY SMAD/FHA domain 118 225 IPR008984 GO:0005515
Vium3202g00007 1203 CDD FHA 128 226 - -
Vium3202g00007 1203 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 380 1202 - -
Vium3202g00007 1203 Gene3D - 125 233 - -
Vium3202g00007 1203 CDD RecA-like_ATAD1 902 1068 - -
Vium3202g00007 1203 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 897 1073 - -
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 512 528 - -
Vium3202g00007 1203 Gene3D - 1071 1165 - -
Vium3202g00007 1203 ProSitePatterns AAA-protein family signature. 1042 1061 IPR003960 GO:0005524|GO:0016887
Vium3202g00007 1203 Gene3D - 897 1178 IPR027417 -
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 1 103 - -
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 277 291 - -
Vium3202g00007 1203 Pfam ATPase family associated with various cellular activities (AAA) 939 1068 IPR003959 GO:0005524|GO:0016887
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 1 26 - -
Vium3202g00007 1203 Pfam FHA domain 147 216 IPR000253 GO:0005515
Vium3202g00007 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1176 IPR027417 -
Vium3202g00007 1203 Coils Coil 859 879 - -
Vium3202g00007 1203 SMART AAA_5 935 1072 IPR003593 GO:0016887
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 277 316 - -
Vium3202g00007 1203 Pfam AAA+ lid domain 1093 1127 IPR041569 -
Vium3202g00007 1203 MobiDBLite consensus disorder prediction 499 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3202g00007 Vium-Chr3202 75385 87296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3202g00007 898 1150 Calmodulin-binding Proteins AT3G56690 40.385 4.89e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3202g00007 - - gmx:100780098 2080.83