Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3202g00006 ATGGTGGGTTTTGAAAGGAGTGGAGCCTTGCAGAATAGTGAACAGGCTCTGCTGCATCTATTTTGTTCCTCATCCCCTGGCCGCCACCTCTCCAAAGATCTTAAAANTGGGGTGGAATGTGAAGGGCTTGAATCCTTGTGCATTAAGGATCAAACACTTAGTATTGAAAATGCAGAGAAGATTGTTGGTTGGGCTATAAGCCGACATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGAATTGGCATCTTACAGTCTATCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGAGGATATTGGAGCTCTTGAAAACGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGTTATTTTGCAAAGGGCAATTAACCAAGCCATGCAAGGGCATTCTTTTATTTGGTCCTCCTGGAACAGGCAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCGAGTATCACATCTAAGTGGTTTGGTGAGGGCGAAAAATATGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGAAGGATACTGAGAGAGTTCTGGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAAGCTGTCATAAGGAGGCTGCCTCGGAGGTTAATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTCATACTGGCAAAAGAAGATTTGTCTTCTGGTCTTGATTTGAATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGACCTTAAGAATTTGTGTGTAACTGCTGCACATTGTCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAACAGGCTGCTGCTCTGGCAGAAGGTAGACCTGCTCCAGCAATAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAGTATGCTCATCAACAGGTGTGTGCAAGCGTTTCCTCTGAATCCGTAAATATGACGGAGCTTCAACAATGGAATGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAGAACATTAAGCTATTTCATGTGA 1323 0.4203 MVGFERSGALQNSEQALLHLFCSSSPGRHLSKDLKXGVECEGLESLCIKDQTLSIENAEKIVGWAISRHLMQNAETDPDAKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSGLDLNAIASMTDGYSGSDLKNLCVTAAHCPIKEILEKEKKEQAAALAEGRPAPAISGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRTLSYFM 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3202g00006 440 ProSitePatterns AAA-protein family signature. 279 298 IPR003960 GO:0005524|GO:0016887
Vium3202g00006 440 Gene3D - 308 402 - -
Vium3202g00006 440 Pfam AAA+ lid domain 330 364 IPR041569 -
Vium3202g00006 440 Coils Coil 96 116 - -
Vium3202g00006 440 CDD RecA-like_ATAD1 139 305 - -
Vium3202g00006 440 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 38 439 - -
Vium3202g00006 440 Gene3D - 134 415 IPR027417 -
Vium3202g00006 440 Pfam ATPase family associated with various cellular activities (AAA) 176 305 IPR003959 GO:0005524|GO:0016887
Vium3202g00006 440 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 134 310 - -
Vium3202g00006 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 414 IPR027417 -
Vium3202g00006 440 SMART AAA_5 172 309 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3202g00006 Vium-Chr3202 71741 75708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3202g00006 135 387 Calmodulin-binding Proteins AT3G56690 40.385 2.91e-44 164