Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3202g00003 ATGGCTGCTCTGACCTCTCTCTCCCTCTCTCTCCGTCCCCTCTCTCTCCGCCGCAAACCAACCACAACAACCTCCGCTACACTTTCTTCACTCCCAGGGAGAACCCATGGGTCTACAACCAAAGCGCCTCGCAGAAGAGCTAGGCGAATCGAAGGTCCTAGAAAAAGCATGGAGGACTCGGTTCAACGCAAGATGGAGCAGTTTTACGAAGGCTCTGATGGGCCTCCGCTTCGCGTTCTTCCCATTGGTGGTTTGGGGGAGATTGGGATGAACTGCATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGACGAGCTTGGAGTTCAGAAGATTATACCTGACACCACGTTTATACGAAAGTGGAGCCATAAAATTGAGGCGCTTGTCATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCATTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTTGTGGCAGATGCATTGTTGAGACATATTTCAACTTCTAATGGAAGGGTCATCACCACCCAATTTGCATCAAATTTACATCGGCTCGGGAGTGTGAAGGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTACTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTCGCATCATATGGAAGTAGTCATGCTTTCAAATTAACCAAGGAAGATCTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAACGAGTCTCGTGTGATGAAAATGCTAAACCGTATATCGGATATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCACGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAACCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTGGGAAAATCAACTGGCATTCGGCACACTGCTTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTTTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCCAAAATTTTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCATATGGCTCGACAAAGGAAAGTTGATGGATGCACTCTACAAATCAGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTATAGAAAATCCTGCATCCACTATTACTGATGAGATAAACACAAAATTGTCTGGAAAAACCCATGCGGGTCTTGGAATATCAACAGCAAAAAGAGCAGTAGATAGACATGAGAAAGGAAATCAGCCCACCTCACTGCAAATTACAGATGATAGTATTCATAATGCCAGTGGACCTGAGGATTATTTATCTGATGAAGACAACACTGCAAGTGGAGCTGAGGGTGATTTATCTGAGTTAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCACCATTACCTGTCGAGAAGCCTTTGGGTGCTAACAATGCATATGATTCACAAAAGGAGCATGAGTCCAATCGGAAGAAAGATGATTCTAAGATCATTGATAAAGCTAAGTCTGAAGAAATCTCTACTTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAGAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGAGGAACTACATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2520 0.4242 MAALTSLSLSLRPLSLRRKPTTTTSATLSSLPGRTHGSTTKAPRRRARRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISTSNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRISDIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTALKYSDGDRAFGTSSELFIDERLRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCIWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPASTITDEINTKLSGKTHAGLGISTAKRAVDRHEKGNQPTSLQITDDSIHNASGPEDYLSDEDNTASGAEGDLSELEDSDEFWKPFIAPLPVEKPLGANNAYDSQKEHESNRKKDDSKIIDKAKSEEISTSEPKSSKSVKRNKWRTDEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3202g00003 839 Gene3D - 278 428 IPR042173 -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 640 654 - -
Vium3202g00003 839 SMART Lactamase_B_5a 89 286 IPR001279 -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 15 37 - -
Vium3202g00003 839 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 481 IPR036866 -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 698 746 - -
Vium3202g00003 839 PANTHER RIBONUCLEASE J 1 483 - -
Vium3202g00003 839 CDD GT1 746 811 - -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 15 61 - -
Vium3202g00003 839 Pfam Myb/SANT-like DNA-binding domain 745 829 IPR044822 -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 631 680 - -
Vium3202g00003 839 MobiDBLite consensus disorder prediction 709 746 - -
Vium3202g00003 839 ProSiteProfiles Myb-like domain profile. 740 804 IPR001005 -
Vium3202g00003 839 Gene3D - 81 489 IPR036866 -
Vium3202g00003 839 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Vium3202g00003 839 Gene3D - 748 808 - -
Vium3202g00003 839 CDD RNaseJ_MBL-fold 80 267 - -
Vium3202g00003 839 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3202g00003 Vium-Chr3202 16178 33835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3202g00003 747 833 Trihelix Transcription Factor Family AT2G38250 34.831 7.30e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3202g00003 Lactamase_B 6.2e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3202g00003 - - gmx:100783850 1422.14