Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3202g00002 ATGGCTGCTCTGACCTCTCTCTCCCTCTCTCTCCGTCCCCTCTCTCTCCGCCGCAAACCAACCACAACAACCTCCGCTACACTTTCTTCACTCCCAGGGAGAACCCATGGGTCTACAACCAAAGCGCCTCGCAGAAGAGCTAGGCGAATCGAAGGTCCTAGAAAAAGCATGGAGGACTCGGTTCAACGCAAGATGGAGCAGTTTTACGAAGGCTCTGATGGGCCTCCGCTTCGCGTTCTTCCCATTGGTGGTTTGGGGGAGATTGGGATGAACTGCATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGACGAGCTTGGAGTTCAGAAGATTATACCTGACACCACGTTTATACGAAAGTGGAGCCATAAAATTGAGGCGCTTGTCATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCATTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTTGTGGCAGATGCATTGTTGAGACATATTTCAACTTCTAATGGAAGGGTCATCACCACCCAATTTGCATCAAATTTACATCGGCTCGGGAGTGTGAAGGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATACTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTACTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTCGCATCATATGGAAGTAGTCATGCTTTCAAATTAACCAAGGAAGATCTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAACGAGTCTCGTGTGATGAAAATGCTAAACCGTATATCGGATATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCACGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAACCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTGGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAACAGAAAAGTCCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAAGTGAACTTTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCCAAAATTTTAGGTAGTTTGGCTCCAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCATATGGCTCGACAAAGGAAAGTTGATGGATGCACTCTACAAATCAGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTATAGAAAATCCTGCATCCACTATTACTGATGAGATAAACACAAAATTGTCTGGAAAAACCCATGCGGGTCTTGGAATATCAACAGCAAAAAGAGCAGTAGATAGACATGAGAAAGGAAATCAGCCCACCTCACTGCAAATTACAGATGATAGTATTCATAATGCCAGTGGACCTGAGGATTATTTATCTGATGAAGACAACACTGCAAGTGGAGCTGAGGGTGATTTATCTGAGTTAGAGGATTCAGATGAATTTTGGAAACCATTCATTGCACCATTACCTGTCGAGAAGCCTTTGGGTGCTAACAATGCATATGATTCACAAAAGGAGCATGAGTCCAATCGGAAGAAAGATGATTCTAAGATCATTGATAAAGCTAAGTCTGAAGAAATCTCTACTTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAGAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGAGGAACTACATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2616 0.4213 MAALTSLSLSLRPLSLRRKPTTTTSATLSSLPGRTHGSTTKAPRRRARRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISTSNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRISDIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVTSMEIFRPKILGSLAPNTLKGKIRITTRCIWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPASTITDEINTKLSGKTHAGLGISTAKRAVDRHEKGNQPTSLQITDDSIHNASGPEDYLSDEDNTASGAEGDLSELEDSDEFWKPFIAPLPVEKPLGANNAYDSQKEHESNRKKDDSKIIDKAKSEEISTSEPKSSKSVKRNKWRTDEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3202g00002 871 Gene3D - 81 493 IPR036866 -
Vium3202g00002 871 Gene3D - 780 840 - -
Vium3202g00002 871 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Vium3202g00002 871 ProSiteProfiles Myb-like domain profile. 772 836 IPR001005 -
Vium3202g00002 871 SMART Lactamase_B_5a 89 286 IPR001279 -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 663 712 - -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 15 37 - -
Vium3202g00002 871 PANTHER RIBONUCLEASE J 1 871 - -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 730 778 - -
Vium3202g00002 871 Pfam Myb/SANT-like DNA-binding domain 777 861 IPR044822 -
Vium3202g00002 871 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
Vium3202g00002 871 CDD GT1 778 843 - -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 15 61 - -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 741 778 - -
Vium3202g00002 871 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Vium3202g00002 871 Gene3D - 278 428 IPR042173 -
Vium3202g00002 871 MobiDBLite consensus disorder prediction 672 686 - -
Vium3202g00002 871 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3202g00002 Vium-Chr3202 16178 33835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3202g00002 779 865 Trihelix Transcription Factor Family AT2G38250 34.831 6.68e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3202g00002 Lactamase_B 7.6e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3202g00002 - - gmx:100783850 1497.64