Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3201g00002 ATGGAATGCCAAGATGGTGGTGATAAGAATGAAAAACATTTACTGCAACAACCTTTGGTGCGACAAAATTCCTTGTACGGTCTGACACTGAATGAAGTTGAGAACGAATTAGGTGAGAGAGGAAAACCAGTGAGTAGCATGAACCTTGATGAGCTTCTAAAAACTGTGTACACTGTTGAAGAAAACCATTCAACCAAAGCTGGTTTATCCTTAACCAGTTCTCTATGTATGAAAACTGTTGATGAGATTTGGAGAGACATACAAGAAAGCAAAGAGAACAAGTTTGAAGAGAGACAGCTTAGACTGGGAGACATAAAATTAGCGGATTTTTTGGTGAAAGCAGGAGTTGTTGTTGAAGCATCTTCTACCGTTGTTAATCCTCAACAACCACAATACCAAATTCCACAACAAGGTTTAATGGGGATTTACATGACTGGCCAGAACATAGCACAATCGTTACACACACGAGCTACTGCTACATCACAAGATAAGACCTTTGAGAGAAGACAAAAGAGGATGATTAAGAATAGAGAATCTGCTGCACGTTCTAGAGCAAGAAAACAAGCTTACACAATTGAATTGGAGCACAAAATCTCCCGTCTGGAAGAAGAAAATCAAAAGCTCAGGAGACAAAAGGAGATAGAGGACATATTATTGAGTGTGCCACCTCAAAAACCAAGATACCAGATTCGTCGAACTACATCAGCTTCATTTTGA 717 0.3933 MECQDGGDKNEKHLLQQPLVRQNSLYGLTLNEVENELGERGKPVSSMNLDELLKTVYTVEENHSTKAGLSLTSSLCMKTVDEIWRDIQESKENKFEERQLRLGDIKLADFLVKAGVVVEASSTVVNPQQPQYQIPQQGLMGIYMTGQNIAQSLHTRATATSQDKTFERRQKRMIKNRESAARSRARKQAYTIELEHKISRLEEENQKLRRQKEIEDILLSVPPQKPRYQIRRTTSASF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3201g00002 238 Coils Coil 191 218 - -
Vium3201g00002 238 Pfam bZIP transcription factor 168 211 IPR004827 GO:0003700|GO:0006355
Vium3201g00002 238 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 171 186 IPR004827 GO:0003700|GO:0006355
Vium3201g00002 238 SMART brlzneu 164 232 IPR004827 GO:0003700|GO:0006355
Vium3201g00002 238 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 166 211 IPR004827 GO:0003700|GO:0006355
Vium3201g00002 238 CDD bZIP_plant_BZIP46 168 213 - -
Vium3201g00002 238 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 166 218 - -
Vium3201g00002 238 Gene3D - 167 218 - -
Vium3201g00002 238 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 20 236 IPR043452 GO:0003700|GO:0045893
Vium3201g00002 238 SUPERFAMILY Leucine zipper domain 168 213 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3201g00002 Vium-Chr3201 5042 6069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3201g00002 17 238 bZIP Transcription Factor Family AT3G56850 44.444 1.30e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3201g00002 bZIP_1 7.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3201g00002 K14432 - var:108332685 306.605