Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3201g00001 ATGAATAATTGTCTCTTAGGAAAACCAGTGAGTAGCATGAACCTTGATGAGCTTCTAAAAACTGTGTACACTGTTGAAGAAAACCATTCAACCAAAGCTGGAGTTGTTGTTGAAGCATTTTCTACCGTTGTTAATCCTCAACAACCACAATACCAAATTCCACAACAAGGTTTAATGGGGATTTACATGACTGGCCAGAACATAGCACAATCGTTACACACACGAGCTACTGCTACATCACAAGATAAGACCTTTGAGAGAAGACAAAAGAGGATGATTAAGAATAGAGAATCTGCTGCACGTTCTAGAGCAAGAAAACAA 321 0.3863 MNNCLLGKPVSSMNLDELLKTVYTVEENHSTKAGVVVEAFSTVVNPQQPQYQIPQQGLMGIYMTGQNIAQSLHTRATATSQDKTFERRQKRMIKNRESAARSRARKQ 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3201g00001 107 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 61 107 IPR043452 GO:0003700|GO:0045893
Vium3201g00001 107 MobiDBLite consensus disorder prediction 74 107 - -
Vium3201g00001 107 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 90 105 IPR004827 GO:0003700|GO:0006355
Vium3201g00001 107 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3201g00001 Vium-Chr3201 2343 2921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3201g00001 50 107 bZIP Transcription Factor Family AT3G56850 53.333 1.93e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3201g00001 K14432 - vum:124833467 204.142