Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00013 ATGGCTTGTTATCAACAAAAACTGTTTGAAAGACTGAAGCCATTCATAGGTGTAGTTTTCTTGCAGTTTGGATATTCTGGTATGGATGTTCTATCCAAGGCTGCACTCAACAGGGGAATGAGTAACTATGTATTTGTTGTGTACCGTCATGTTTTTGCCTTTGTTGTCATGGCCCCTTTTGCAGTGTTCTTGGAGAAGAAAGTGAGGCCGAAGATGACGTTTTCGATCTTCATGAAGATAGTGATTCTCAGCCTGCTAGAGCCAGTTATTGATCAAAATTTATACTTTTTGGGAATGAAGTACACCACAGCAACCTTTGCTGTTTCCATGTACAATGTTCTCCCTGCCATTACCTTTGTCATGGCTTGGATTCTTAGGTAA 381 0.4042 MACYQQKLFERLKPFIGVVFLQFGYSGMDVLSKAALNRGMSNYVFVVYRHVFAFVVMAPFAVFLEKKVRPKMTFSIFMKIVILSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFVMAWILR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00013 126 Pfam EamA-like transporter family 20 125 IPR000620 GO:0016020
Vium3198g00013 126 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 125 - -
Vium3198g00013 126 PANTHER WAT1-RELATED PROTEIN 13 123 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00013 Vium-Chr3198 172160 172811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00013 5 124 Nodulin-like Gene Family AT2G37460 69.167 2.16e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00013 - - vum:124833457 241.506