Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00012 ATGGCTTGTTATCAACAAAAACTGTTTGAAAGACTGAAGCCATTCATAGGTGTAGTTTTCTTGCAGTTTGGATATTCTGGTATGGATGTTCTATCCAAGGCTGCACTCAACAGGGGAATGAGTAACTATGTATTTGTTGTGTACCGTCATGTTTTTGCCTTTGTTGTCATGGCCCCTTTTGCAGTGTTCTTGGAGAAGAAAGTGAGGCCGAAGATGACGTTTTCGATCTTCATGAAGATAGTGATTCTCAGCCTGCTAGAGCCAGTTATTGATCAAAATTTATACTTTTTGGGAATGAAGTACACCACAGCAACCTTTGCTGTTTCCATGTACAATGTTCTCCCTGCCATTACCTTTGTCATGGCTTGGATTCTTAGGCTTGAGAAGATAAAATTAAAAAGCACACGCAGTCAAGCAAAGGTGGTGGGAACTTTAGCAACTGTTGCAGGTGCCATGATCATGACACTGATAAAGGGTCCAATACTCGATCTATTTGGAACACACGCCAGCAATACAAACAACGTGCAAAATGGTGGGGTAAATCTTGAACATGCAATAAAGGGATCAGTGATGATCACAATTGGCTGCTTTAGTTGCGCTTGTTTCATGATTCTCCAAGCTATTACCATTGAAGCCTACCCTGCTGAACTCTCTCTTACAGCATGGATATGCTTATTGGGAACGGTTGAAGGTGGCATAGTGGCACTGGTTATGGAAAGGAATAATTTTTCAGCTTGGTCTCTGAAATGGGATACAAAATTGCTTGCTGCTGTCTACAGTGGCATAGTTTGCTCAGGAATGGCTTATTACATCCAAGGAGCTGTGATGAAAGATAGAGGTCCGGTCTTTGTGACAACTTTTAACCCTCTCTGCATGGTCATTGTGGCTATCATGGGCTCCTTCTTTCTGGCAGAACAAATGTACCTTGGAAGGGCAATTGGTGCTATCGTGATTATTGTAGGACTGTATCTGGTGGTGTGGGGTAAAAGCAAAGACTACGAGTCATCAAGTACGATTACTGAAGAGAATATGTTGTCAGCCAAGCAAACAGTAGAAAAGAGCAATAGCAAAGAAGAACATTTCAGTAACTTAGGCACCATAGCACGAGATGAACAAGTATGA 1122 0.4189 MACYQQKLFERLKPFIGVVFLQFGYSGMDVLSKAALNRGMSNYVFVVYRHVFAFVVMAPFAVFLEKKVRPKMTFSIFMKIVILSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFVMAWILRLEKIKLKSTRSQAKVVGTLATVAGAMIMTLIKGPILDLFGTHASNTNNVQNGGVNLEHAIKGSVMITIGCFSCACFMILQAITIEAYPAELSLTAWICLLGTVEGGIVALVMERNNFSAWSLKWDTKLLAAVYSGIVCSGMAYYIQGAVMKDRGPVFVTTFNPLCMVIVAIMGSFFLAEQMYLGRAIGAIVIIVGLYLVVWGKSKDYESSSTITEENMLSAKQTVEKSNSKEEHFSNLGTIARDEQV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00012 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 331 - -
Vium3198g00012 373 PANTHER WAT1-RELATED PROTEIN 14 337 IPR030184 GO:0016020|GO:0022857
Vium3198g00012 373 Pfam EamA-like transporter family 21 154 IPR000620 GO:0016020
Vium3198g00012 373 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020
Vium3198g00012 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00012 Vium-Chr3198 165288 168177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00012 5 363 Nodulin-like Gene Family AT2G37460 64.067 3.08e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00012 - - vra:106757633 696.041