Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00010 ATGAATATGAAGAGACAGAGAGAAATTGAGGGGTTTGCAACGATTGATTTGGCAAATTGTCTAATGCTTCTATCGTGCCCCCAACAAAATAAGTTACAGAGAAAACATGTTGAGGATGTGGAATTTGAGTGCAAGACATGCAAGCGAAAGTTCTCGTCTTTTCAAGCATTGGGTGGCCATAGGGCTAGCCATAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACAGCCTATAGGTCTAAGTTTGGGAATTAGGAAACCCAAAATGCACGAGTGTACCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGAGGCCACATGAGAAGACACAGAGCTTCCATTAATGGAGATTTTTCTTCGGTTAAGCATGCTGCAGAAGTACCCGTTTTGAAAAGATCAAATAGCACGAGGGGTATGTGCATGGACTTGAACCTAACACCCTTAGAGAATGACTTCAAGTTATTGTTTGGAAAAACCCCACTCAATGCTGGTGCCCTAGTCTGA 513 0.4269 MNMKRQREIEGFATIDLANCLMLLSCPQQNKLQRKHVEDVEFECKTCKRKFSSFQALGGHRASHKRSKLEGDELKAQPIGLSLGIRKPKMHECTICGQEFSLGQALGGHMRRHRASINGDFSSVKHAAEVPVLKRSNSTRGMCMDLNLTPLENDFKLLFGKTPLNAGALV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00010 170 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vium3198g00010 170 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Vium3198g00010 170 SUPERFAMILY beta-beta-alpha zinc fingers 42 113 IPR036236 -
Vium3198g00010 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Vium3198g00010 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vium3198g00010 170 SMART c2h2final6 91 113 IPR013087 -
Vium3198g00010 170 SMART c2h2final6 42 64 IPR013087 -
Vium3198g00010 170 Pfam C2H2-type zinc finger 42 66 - -
Vium3198g00010 170 Pfam C2H2-type zinc finger 91 115 - -
Vium3198g00010 170 Gene3D Classic Zinc Finger 39 113 - -
Vium3198g00010 170 PANTHER ZINC FINGER PROTEIN ZAT5 13 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00010 Vium-Chr3198 141047 141784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00010 3 162 C2H2 Transcription Factor Family AT2G37430 47.059 3.96e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3198g00010 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00010 - - gmx:100806997 250.751