Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00009 ATGGTAGCAATGAAGAGACAACGTGGTAACGAAGGATCCGAGAACTTAGATTTGGCAAAGTGTCTTATGCTGTTCTCTTGTCCTGAAGAAAGCAACAAGGCACAAGAGAAAGGTTTTGGATCTCTGGAATTTGAGTGCAAGACGTGCAACCGCAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAAGTTGAAGGGGAAGAACTGAAAGAACAGGGAAAAAGTCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGTTCCATCTGTGGCCAAGAGTTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACACAGAGGTATCAGCAACGAAGGCTTTGTTCCTATTCCTTCTATCGACCAAGTTATTGCGAAATTCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTCTAG 468 0.4679 MVAMKRQRGNEGSENLDLAKCLMLFSCPEESNKAQEKGFGSLEFECKTCNRKFSSFQALGGHRASHKRQKVEGEELKEQGKSLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGISNEGFVPIPSIDQVIAKFPVLKRSNSTRVMCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00009 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vium3198g00009 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vium3198g00009 155 PANTHER ZINC FINGER PROTEIN ZAT5 10 153 - -
Vium3198g00009 155 SMART c2h2final6 92 114 IPR013087 -
Vium3198g00009 155 SMART c2h2final6 44 66 IPR013087 -
Vium3198g00009 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vium3198g00009 155 Gene3D Classic Zinc Finger 42 115 - -
Vium3198g00009 155 Pfam C2H2-type zinc finger 44 69 - -
Vium3198g00009 155 Pfam C2H2-type zinc finger 92 116 - -
Vium3198g00009 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Vium3198g00009 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00009 Vium-Chr3198 136484 137190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00009 4 153 C2H2 Transcription Factor Family AT2G37430 44.720 8.26e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3198g00009 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00009 - - pvu:PHAVU_001G170800g 304.293