Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00004 ATGAAGAAGCTATTAGCTGAAGAACTGTCCCGAGAAACTGAACCCAAAAGAAGAGCTCCCGGTGTCATAGGCAGATTAATGGGTCTTGATGGACTTCCGTTGCAATTGCCTGCTAATAAGCATCACAAGCATGTGCCAGAAAATAATGTGAAAGGGACAACACCGGCAGCGAAAACTCGAAGCAGTGGTAAACTATACGGCAGTCGAACATCTGGAAGATATTCAAAGAATCAGCAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCTCAAACATAGAGGGTTGTAGGTATTCGTCCCAGGGGTCTGCAAAGTTGAAGATCACTGATGATGAAATGTCATTTGTTGAACAGAAATTCATGGATGCCAAACTCCGTGCAACTTATCAGGATTTACCGTCTTCCCAGGATTCCCATGATACACTCGAGATTCTAGACTCTAACAATGATCTTTTGCAAAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAGGCATCTAGATGATCTGCAAGGTTCCCCTTTCGAATCACATTTTGATCACATCAAAGGTACCAAATCATCAGATATAGAAAGCTATGAACATGGTGACTTAAGCCCGAAGCCGGGTAGGGAGATAAAAGGGTTGAATTACAATAGATCTCATCAGAAGCATCGTGATGGTTATTCTTCCCATGTAATCAGAAAACAAGATACTCATAGTTCGCCAAAATCATCAAAGCTTCAGTTTCGGGGAAGAGGTGAGCCTGATGCAGTCCCAACAAGGATTGTTATCCTAAAACCTAATCTTGGAAAAGTGCAGAAAGCTACCAAAATTGGTTCACCACCTTGTTCTTCACATACTTCTCTGTTGGATTATGGAAAGTATCCTAAATTTTCAGATAGCAGATTTAGGGACGCTGAAGTGAATCAAAGGATAAATTTGCCTGATAATGCCTGGCATTCAAGGCAAAATTCTTTGGAATCAAGAGAAATTGCAAAGGAAATCACAAGCCAAATGAAAAATAATTTGAGTAATGGCTCCATGTTATTATCAACTTCTAGATTTAGAGGAAATACGTGGGACAATGGCTCATGTAGTTTTTCTGGGAATGAATCTCTTGAGGAATCAGAGGTGACACCTGCAACCTTGGGAAACTCATTTTACGTAAGTAATACTATCAGCCCATCATCATGTTTTAGTGAATCATTTGTGAGTAAAGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAAATGTCACTCAAGTCTCAGCAGGGTCATTCTGTATCCAGGAGTGGTACTCTAGCTGAAATGCTTGCGACCCCTGATAAGGAAACTAAAACAGCTAATTTTGACAGCAGCTCTAGTGGGGGTTTACGTGATAAACTTTCTAGCAATGGTAAACCTGCTGGGTGGGTTGAACCATTGGGTATTAGCAGTAGGGATGGATGGAAGGATGGATGTATTGGAAGTTTACCAAGGTCTAAATCTCTTCCTGCCTCATCTACTACTTCTTTCGGAAGTCCTAGAACAATTTTGTACCATGAAGCTCTTCACGATGATCGATTTATGATGCCAAAGGTAGCCTGTAAACGGGAAAGGAAGAAAGTGGTGAAATGTCTTGATCAGAGACAGTGTATGAATACGAGAAACCTAAAAAGCAAGAAGTATCGGTGTCCTCATCCATCAAATCTAGAAGGCAATGAGTCATCCCCAGACTTGAATACAATTCAAAATAAAGTGAGGCTTAATCTTGAAGAGGATTTGCCGAAGCACGAAACGGTTGCCGCTGGATCATTAGCTGATATCGATGGAGAAACTATTGCAGTTACTGAAGCTGTTGTGAATGTGGCAGATGAAAATGCAGTTGTTTCATCTGAATCTTATATTAAGGAGTTATCAGTTGGGTCTTCCGCTAAAAATTCTGTCCCCTTACAAACACCTGTATCTGGACTTGAATCTTCATGCTGTAAAGATGCGGATCAACCCAGTCCAGTCTCAGTGCTAGAACCTTCTTTTACTGATGATCTGTCATCGTGTTCCGAGTGTTTTGAAAGTCTCAGTGTTGACATACAAGGGCTTCGAATGCAACTTCAGTTGCTGAAGCTAGAATCTGAAGAATTTGTGGAAGGATCCGTGCTAATTCAAAGTGATGAAGATGGTGGGGAAGCATACACAGGAATTTCAGAAGACAACGGATTACTTAATGGAGATAGCTGGGAGTCTTCCTACATGATTGATGTCTTGTCTGAATCTGGAATTGATAGAGCTTTGCCTGATGCATTTTTGGAAGTTTGGCATTCTCTTGAATGCCCTGTTAGTCTTTCGGTGTTTGATGAGCTTGAAAAGAAGTACTCTGATTGGAGTACTTGCCCACGGTCCGAAAGGAGATTGCTTTTTGATCGTATCAATTGGGGAATTATCGACATATACGAGCAATTCGTTAGTGCACAACCATGGGTAATCCCTTCGAGAGCCACAAATCTTTGCTCTAGTTCGAAATTGATTAAAAGTGGACTCCAAGAATCTTTGTACAAGATGCTGTGGAGTCAGGGAAAAGTAAAGGATACGACACTGGGGAAGGTGTTGGTTAGTGAATTGCAGTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGCAAAGTTGAGAGGTTGCTACTTGATGATCTAGTGGCAGAGATAGCTGTTACATAG 2676 0.4103 MKKLLAEELSRETEPKRRAPGVIGRLMGLDGLPLQLPANKHHKHVPENNVKGTTPAAKTRSSGKLYGSRTSGRYSKNQQEFKDVFEVSEISNIEGCRYSSQGSAKLKITDDEMSFVEQKFMDAKLRATYQDLPSSQDSHDTLEILDSNNDLLQKYFKRPDSLFKRHLDDLQGSPFESHFDHIKGTKSSDIESYEHGDLSPKPGREIKGLNYNRSHQKHRDGYSSHVIRKQDTHSSPKSSKLQFRGRGEPDAVPTRIVILKPNLGKVQKATKIGSPPCSSHTSLLDYGKYPKFSDSRFRDAEVNQRINLPDNAWHSRQNSLESREIAKEITSQMKNNLSNGSMLLSTSRFRGNTWDNGSCSFSGNESLEESEVTPATLGNSFYVSNTISPSSCFSESFVSKEAKKRLSERWKMSLKSQQGHSVSRSGTLAEMLATPDKETKTANFDSSSSGGLRDKLSSNGKPAGWVEPLGISSRDGWKDGCIGSLPRSKSLPASSTTSFGSPRTILYHEALHDDRFMMPKVACKRERKKVVKCLDQRQCMNTRNLKSKKYRCPHPSNLEGNESSPDLNTIQNKVRLNLEEDLPKHETVAAGSLADIDGETIAVTEAVVNVADENAVVSSESYIKELSVGSSAKNSVPLQTPVSGLESSCCKDADQPSPVSVLEPSFTDDLSSCSECFESLSVDIQGLRMQLQLLKLESEEFVEGSVLIQSDEDGGEAYTGISEDNGLLNGDSWESSYMIDVLSESGIDRALPDAFLEVWHSLECPVSLSVFDELEKKYSDWSTCPRSERRLLFDRINWGIIDIYEQFVSAQPWVIPSRATNLCSSSKLIKSGLQESLYKMLWSQGKVKDTTLGKVLVSELQWLNLRDDIDGIGSKVERLLLDDLVAEIAVT 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00004 891 MobiDBLite consensus disorder prediction 439 455 - -
Vium3198g00004 891 PANTHER AFADIN 1 889 - -
Vium3198g00004 891 Pfam DUF761-associated sequence motif 13 33 IPR032795 -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 433 469 - -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 186 249 - -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 42 73 - -
Vium3198g00004 891 Pfam Protein of unknown function (DUF3741) 117 161 IPR022212 -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 186 235 - -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 52 73 - -
Vium3198g00004 891 Pfam Domain of unknown function (DUF4378) 735 887 IPR025486 -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 1 19 - -
Vium3198g00004 891 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00004 Vium-Chr3198 58773 64358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00004 1 890 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 34.569 4.47e-124 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00004 - - pvu:PHAVU_001G171300g 1498.8