Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00003 ATGCAGAGACCTAAAGGAAGCAAGCAGGTTCATCGACGTAGAAAACTCCAGAGTTTTCCCTCTGATTCTGGTTCTTGCAGTGATGGGGTTGCGGATGAAGATTCAGGATCATTTCAATTGGGGTTCGGGTCCTCGAAGCAACCGTTTGGAACTCCCATGAAGAAGCTATTAGCTGAAGAACTGTCCCGAGAAACTGAACCCAAAAGAAGAGCTCCCGGTGTCATAGGCAGATTAATGGGTCTTGATGGACTTCCGTTGCAATTGCCTGCTAATAAGCATCACAAGCATGTGCCAGAAAATAATGTGAAAGGGACAACACCGGCAGCGAAAACTCGAAGCAGTGGTAAACTATACGGCAGTCGAACATCTGGAAGATATTCAAAGAATCAGCAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCTCAAACATAGAGGGTTGTAGGTATTCGTCCCAGGGGTCTGCAAAGTTGAAGATCACTGATGATGAAATGTCATTTGTTGAACAGAAATTCATGGATGCCAAACTCCGTGCAACTTATCAGGATTTACCGTCTTCCCAGGATTCCCATGATACACTCGAGATTCTAGACTCTAACAATGATCTTTTGCAAAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAGGCATCTAGATGATCTGCAAGGTTCCCCTTTCGAATCACATTTTGATCACATCAAAGGTACCAAATCATCAGATATAGAAAGCTATGAACATGGTGACTTAAGCCCGAAGCCGGGTAGGGAGATAAAAGGGTTGAATTACAATAGATCTCATCAGAAGCATCGTGATGGTTATTCTTCCCATGTAATCAGAAAACAAGATACTCATAGTTCGCCAAAATCATCAAAGCTTCAGTTTCGGGGAAGAGGTGAGCCTGATGCAGTCCCAACAAGGATTGTTATCCTAAAACCTAATCTTGGAAAAGTGCAGAAAGCTACCAAAATTGGTTCACCACCTTGTTCTTCACATACTTCTCTGTTGGATTATGGAAAGTATCCTAAATTTTCAGATAGCAGATTTAGGGACGCTGAAGTGAATCAAAGGATAAATTTGCCTGATAATGCCTGGCATTCAAGGCAAAATTCTTTGGAATCAAGAGAAATTGCAAAGGAAATCACAAGCCAAATGAAAAATAATTTGAGTAATGGCTCCATGTTATTATCAACTTCTAGATTTAGAGGAAATACGTGGGACAATGGCTCATGTAGTTTTTCTGGGAATGAATCTCTTGAGGAATCAGAGGTGACACCTGCAACCTTGGGAAACTCATTTTACGTAAGTAATACTATCAGCCCATCATCATGTTTTAGTGAATCATTTGTGAGTAAAGAGGCAAAGAAGAGATTATCAGAGAGGTGGAAAATGTCACTCAAGTCTCAGCAGGGTCATTCTGTATCCAGGAGTGGTACTCTAGCTGAAATGCTTGCGACCCCTGATAAGGAAACTAAAACAGCTAATTTTGACAGCAGCTCTAGTGGGGGTTTACGTGATAAACTTTCTAGCAATGGTAAACCTGCTGGGTGGGTTGAACCATTGGGTATTAGCAGTAGGGATGGATGGAAGGATGGATGTATTGGAAGTTTACCAAGGTCTAAATCTCTTCCTGCCTCATCTACTACTTCTTTCGGAAGTCCTAGAACAATTTTGTACCATGAAGCTCTTCACGATGATCGATTTATGATGCCAAAGGTAGCCTGTAAACGGGAAAGGAAGAAAGTGGTGAAATGTCTTGATCAGAGACAGTGTATGAATACGAGAAACCTAAAAAGCAAGAAGTATCGGTGTCCTCATCCATCAAATCTAGAAGGCAATGAGTCATCCCCAGACTTGAATACAATTCAAAATAAAGTGAGGCTTAATCTTGAAGAGGATTTGCCGAAGCACGAAACGGTTGCCGCTGGATCATTAGCTGATATCGATGGAGAAACTATTGCAGTTACTGAAGCTGTTGTGAATGTGGCAGATGAAAATGCAGTTGTTTCATCTGAATCTTATATTAAGGAGTTATCAGTTGGGTCTTCCGCTAAAAATTCTGTCCCCTTACAAACACCTGTATCTGGACTTGAATCTTCATGCTGTAAAGATGCGGATCAACCCAGTCCAGTCTCAGTGCTAGAACCTTCTTTTACTGATGATCTGTCATCGTGTTCCGAGTGTTTTGAAAGTCTCAGTGTTGACATACAAGGGCTTCGAATGCAACTTCAGTTGCTGAAGCTAGAATCTGAAGAATTTGTGGAAGGATCCGTGCTAATTCAAAGTGATGAAGATGGTGGGGAAGCATACACAGGAATTTCAGAAGACAACGGATTACTTAATGGAGATAGCTGGGAGTCTTCCTACATGATTGATGTCTTGTCTGAATCTGGAATTGATAGAGCTTTGCCTGATGCATTTTTGGAAGTTTGGCATTCTCTTGAATGCCCTGTTAGTCTTTCGGTGTTTGATGAGCTTGAAAAGAAGTACTCTGATTGGAGTACTTGCCCACGGTCCGAAAGGAGATTGCTTTTTGATCGTATCAATTGGGGAATTATCGACATATACGAGCAATTCGTTAGTGCACAACCATGGGTAATCCCTTCGAGAGCCACAAATCTTTGCTCTAGTTCGAAATTGATTAAAAGTGGACTCCAAGAATCTTTGTACAAGATGCTGTGGAGTCAGGGAAAAGTAAAGGATACGACACTGGGGAAGGTGTTGGTTAGTGAATTGCAGTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGCAAAGTTGAGAGGTTGCTACTTGATGATCTAGTGGCAGAGATAGCTGTTACATAG 2832 0.4145 MQRPKGSKQVHRRRKLQSFPSDSGSCSDGVADEDSGSFQLGFGSSKQPFGTPMKKLLAEELSRETEPKRRAPGVIGRLMGLDGLPLQLPANKHHKHVPENNVKGTTPAAKTRSSGKLYGSRTSGRYSKNQQEFKDVFEVSEISNIEGCRYSSQGSAKLKITDDEMSFVEQKFMDAKLRATYQDLPSSQDSHDTLEILDSNNDLLQKYFKRPDSLFKRHLDDLQGSPFESHFDHIKGTKSSDIESYEHGDLSPKPGREIKGLNYNRSHQKHRDGYSSHVIRKQDTHSSPKSSKLQFRGRGEPDAVPTRIVILKPNLGKVQKATKIGSPPCSSHTSLLDYGKYPKFSDSRFRDAEVNQRINLPDNAWHSRQNSLESREIAKEITSQMKNNLSNGSMLLSTSRFRGNTWDNGSCSFSGNESLEESEVTPATLGNSFYVSNTISPSSCFSESFVSKEAKKRLSERWKMSLKSQQGHSVSRSGTLAEMLATPDKETKTANFDSSSSGGLRDKLSSNGKPAGWVEPLGISSRDGWKDGCIGSLPRSKSLPASSTTSFGSPRTILYHEALHDDRFMMPKVACKRERKKVVKCLDQRQCMNTRNLKSKKYRCPHPSNLEGNESSPDLNTIQNKVRLNLEEDLPKHETVAAGSLADIDGETIAVTEAVVNVADENAVVSSESYIKELSVGSSAKNSVPLQTPVSGLESSCCKDADQPSPVSVLEPSFTDDLSSCSECFESLSVDIQGLRMQLQLLKLESEEFVEGSVLIQSDEDGGEAYTGISEDNGLLNGDSWESSYMIDVLSESGIDRALPDAFLEVWHSLECPVSLSVFDELEKKYSDWSTCPRSERRLLFDRINWGIIDIYEQFVSAQPWVIPSRATNLCSSSKLIKSGLQESLYKMLWSQGKVKDTTLGKVLVSELQWLNLRDDIDGIGSKVERLLLDDLVAEIAVT 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00003 943 MobiDBLite consensus disorder prediction 238 301 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 1 74 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 57 71 - -
Vium3198g00003 943 Pfam Protein of unknown function (DUF3741) 169 213 IPR022212 -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 19 46 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 238 287 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 491 507 - -
Vium3198g00003 943 PANTHER AFADIN 8 941 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 104 126 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 94 126 - -
Vium3198g00003 943 MobiDBLite consensus disorder prediction 485 521 - -
Vium3198g00003 943 Pfam Domain of unknown function (DUF4378) 787 939 IPR025486 -
Vium3198g00003 943 Pfam DUF761-associated sequence motif 65 85 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00003 Vium-Chr3198 58773 64760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00003 48 942 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 34.707 1.98e-126 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00003 - - pvu:PHAVU_001G171300g 1589.32