Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3198g00001 ATGAGAAAGCTGTGTTTTAACCCCAAGACGGCGTCGTTTGCCTTGGCCCGCAATTCTCCTTCTTCGCCACAATCTTTAATCTCAAGCCCTACACCGCCCAGGCTCAGTTTTTCAGAACCTGGCAGCGTCGTCGACGAAGATAGCTTCATGGAGGAAGCAGAGGCAATCATACTCAAATGGAACCCTGACTCCTCGGCCTACGCCAAAGTCACTTCCCTATTTTACCAAGACAAAACGGAAGCCAAACACTACATTAACTGCGTTAACCAGCTTCACCAAACCATGCATTCCTTGATCTCTCACAGCCCTTCCTCTCATAAACTCGTCCTCGCTCACAACCTAATGCAGATCGCCATGAAAAGACTCAAGAAAGAGTTCTACCAGATCTTATGCATGAACCGCGCTCACCTTGACCCCGAATCGGTCTCCGCCAGATCCTCTCGCACCTCCGCCAATTCCAGCTGCTCCGATTGCGACGACGACTTCGCGGCCGAAGACGACGATATTCGTGCCGCCGGCGATTCTATCACCGAAGTCGAACAGGTTTCCTCAGGCGCCATGGCGGATCTGAAATTAATTGCCGACTGCATGGTCTCTTCCGGCTACGCAAAGGAGTGCGTTAGCGTTTACATCGTGATCCGAAAATCCATAATCGACGAAGGAATTTATCGCCTAGGCGTTGAGAAACTGAGCTCGTCGCGCGCAAACAAGATGGATTGGGAAGTGCTTGATTTGAAAATCAAGAGTTGGTTGGAGGCGGTGAGGATTGCCGTTAGAACGCTGTTTAACGGAGAGAGAATCCTCTGCGACAACGTCTTCAGTTACTCAGATTCCGTAAGAGAATCCTGCTTCGCCGAGATTTCCAGAGACGGCGCCTCTCTTCTTTTTGGATTCCCCGAACTCGTTGCCAAAACAAAGAAATCGTCGCCGGAGAAGCTGTTCCGCGTGCTCGACATGCACGCTGTGGCTTCAGAACTGTTGCCGGAGATCGAGTCCATATTTTCCTCCGATTACAACTCCGCCGTGCGTTCTCAGGTCCTCACTTCAATTCAACGACTCACAGAGTCTGCGCAATTCTTGCTCACTGAGTTCGAGTCCACGATGCAGAAAGACTCTTCCAAGACTGCGGTGAACGGCGGCGGCGTGCACTCGCTCACGATTCAGACAATGAATTATCTCGCAATCCTCGCAGATTACGTCAACGTTCTCTCTGACATATTCCCGCGCGAGTGGCTTCCTCTGCCGAAGTCTTCGTCGCTGCCGGAGTCTTATTTATACAGTCCAGAGTCTGATTACTCAGTGTCGACGCCGGCGCTGACGGTGCGCATGGCGTGGCTGATTCTCGTCCTCCTTTGCAAGCTCGATGGCAAAGCGAAGCATTGCAAGGACGTTTCACTATCCTACTTGTTTCTCGCGAACAATCTCTGGTACGTGGTGGCCAGAGTCCGAAGCTCGAACCTGCAGTACGTGCTTGGCGACGAATGGATTACGAAGCACGAAGCTAAAGCGAAGAGGTTTGTGGCGAACTACGAGAAGATAGCTTGGGGAGAGGTGGTTTCATCGCTGCCGGAAAATCCGGCCGCAGCGGAAGCGAGGGCGGTGTTCGAGAACTTCAACCTAAAATTCGAGGAAGCATATCGGAAGCAGAACTCGTTTGTGGTAGCTGATAGAGAACTGCGAGACGAAATAAAAGGTTCGATCGCGAGAAGTATTGTGCCGAAATATCGCGAGTGGTATAATGAGCTGCTTGCTTCGGTGGGATCAGTGAGGGACTTGACGGTGAGAGAAATTGTGACGTTTACCCCACAAGACATTGAAAATTACCTCGCTAACCTCTTCTTATTTGGAACGTCATCCAGTTCTGTATCCTCCTCGTCGGTAACTTCGTCCCCTCTCCGGCGTTGGAGTTGA 1911 0.5128 MRKLCFNPKTASFALARNSPSSPQSLISSPTPPRLSFSEPGSVVDEDSFMEEAEAIILKWNPDSSAYAKVTSLFYQDKTEAKHYINCVNQLHQTMHSLISHSPSSHKLVLAHNLMQIAMKRLKKEFYQILCMNRAHLDPESVSARSSRTSANSSCSDCDDDFAAEDDDIRAAGDSITEVEQVSSGAMADLKLIADCMVSSGYAKECVSVYIVIRKSIIDEGIYRLGVEKLSSSRANKMDWEVLDLKIKSWLEAVRIAVRTLFNGERILCDNVFSYSDSVRESCFAEISRDGASLLFGFPELVAKTKKSSPEKLFRVLDMHAVASELLPEIESIFSSDYNSAVRSQVLTSIQRLTESAQFLLTEFESTMQKDSSKTAVNGGGVHSLTIQTMNYLAILADYVNVLSDIFPREWLPLPKSSSLPESYLYSPESDYSVSTPALTVRMAWLILVLLCKLDGKAKHCKDVSLSYLFLANNLWYVVARVRSSNLQYVLGDEWITKHEAKAKRFVANYEKIAWGEVVSSLPENPAAAEARAVFENFNLKFEEAYRKQNSFVVADRELRDEIKGSIARSIVPKYREWYNELLASVGSVRDLTVREIVTFTPQDIENYLANLFLFGTSSSSVSSSSVTSSPLRRWS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3198g00001 636 SUPERFAMILY Cullin repeat-like 45 613 IPR016159 -
Vium3198g00001 636 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 613 IPR004140 GO:0000145|GO:0006887
Vium3198g00001 636 MobiDBLite consensus disorder prediction 17 36 - -
Vium3198g00001 636 MobiDBLite consensus disorder prediction 17 41 - -
Vium3198g00001 636 Pfam Exo70 exocyst complex subunit 248 610 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3198g00001 636 Gene3D Exocyst complex component Exo70 64 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3198g00001 Vium-Chr3198 30127 32446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3198g00001 50 613 EXO70 exocyst subunit family AT3G09520 54.435 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3198g00001 K07195 - gmx:100810548 1047.73