Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3193g00003 ATGGCGTTTTCTACTACGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTGCATCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCGTACGGAGTTGATGACCAGTCTCTTAAGGACGCATTTACTAATTTTGGAGACGTGGTTGAGGCAAGGGTTATAACTGATAGAGACACCGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAGTGATGAGTCTGCAAGTAAGGCACTGTCTGCAATGGACGGGCAGGATCTAAATGGGCGAAACATTAGGGTATCTTATGCAACTGATAGATCTTCTGGACCACGACCTGGTGGTGGTGGTGGTTTTGGTGGTGGTGGTTATGCACCTCGTAATGGCGGTGGCGGTGGTTATGGTGGTGGTGGTTGGTGA 444 0.4842 MAFSTTVGNVLRQGAARSTQAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFTNFGDVVEARVITDRDTGRSRGFGFVNFSSDESASKALSAMDGQDLNGRNIRVSYATDRSSGPRPGGGGGFGGGGYAPRNGGGGGYGGGGW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3193g00003 147 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 142 - -
Vium3193g00003 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vium3193g00003 147 MobiDBLite consensus disorder prediction 111 147 - -
Vium3193g00003 147 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vium3193g00003 147 FunFam Glycine-rich RNA-binding protein 2 25 147 - -
Vium3193g00003 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Vium3193g00003 147 Gene3D - 28 146 IPR012677 -
Vium3193g00003 147 SUPERFAMILY RNA-binding domain, RBD 33 146 IPR035979 GO:0003676
Vium3193g00003 147 CDD RRM2_NsCP33_like 37 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3193g00003 Vium-Chr3193 25489 27213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3193g00003 35 127 Eukaryotic Initiation Factors Gene Family AT1G49760 40.860 2.56e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3193g00003 - - gmx:100499841 201.83