Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3193g00001 ATGAGAATGTTGCCTGTTTGCTCAGCCACCCCGAGCTATTCCACGTCTTCCCAGATCCCCTTGTTTGGGGGATTGCTTCCCAATCGTAAAGATCTCGAGAGCAGACTTGTGGTTGAAGAAGGCGTGCATTTGGCTTCGCATCATGGAACTTATTCACTCAGAAATTCATTTGCAGTGCGCGCTGCTACAAAGACGGTCTTGGATGGTTTTTCTTCTACAAGTGAACCGGGAGGATACCTTACAAGCCCACGGGGTTATTCACCACTGACAACCGACGGACATCATTCACTGAGGCACTTGGAAAGTTATCATTTATCCACTGTGCCAGAGGGATTAGTGGCCTTTGCAGAAGAACAGTCCACTCCACAACCAGAAACATTATCAAGTACTGATATAATACCAGAGAATTTTGCCCCAAGGCTTAGTTCAATTAATGTGGACAATGAATCATTAGCCAGTACAAAAGCAAGTGTTGGGGATTTTCTTTCTGGAATCAATGACTCATTCAAGGCCTCAATCAGTCAGGGAGAAAATGCTTTACGAAGCTCACTGGATACAGTCACTTCTTTTGCAGATTCTGTTGGTAAAACTGCTACTAAATCTGTTGATAATGCTTTTAGTAAGGCATTTTCTGCTGTTGATCAAACAGGAGACATAGCAAACAATAAACTCACTAGCTTTTCAAGTGGGTTGAGTGGAGTCACAAATAAAGCACCTGCTGTGGCTATTGATTTGTTGCGCCGCGCAATTGTAGTAGTAGAGAGTTCCCTGACAAGCGGGGCTTCGTATGTTGTCTACCTATATGGGTCGGCCAAGGATCTCCTTCCAGCAGGGATTAGGGACACAGTCAATGTATATGAAGATAAAGCAACAGAAATCTTGAGGCCTGTTGGTTCTGCAACACAAAGGATATACACGGGTGTCTACTCATTGGAGAAGACTTTTGGCTTGGATCCAAATGACCCAATTATTCCATTTTTTGTTCTTGTAGGCTCTTCAGCCACATTATGGGCCTTTTATTGGTTGTGGACATATGGAGGGTATTCAGGAGATTTGTCCCCTAAATCAGCTTTGGAGCTTTTGTCTGAGGATGCAAATGCTGCACTTATTGATGTCCGCTCTGAGGAATTGCGAGAAAGAGATGGCGTTCCTGATCTCCGACGAGCTGCTCGTTTTCGTTATGCAAGTGTAACTCCTCTCGAGGTTGATGGTTCCATACGCAAGTTGTTGAAGAGTGGTAGAGACCTCGAAGATTCCTTGATTGCTGTTATTATTCGAAATTTGAAGACTGTTAAGGACAGTTCCAAGGTTATAGTGTTGGATGCTGATGGTACTCGTTCTAAAGGCATTGCAAGATCCTTGAAGAAGATTGGGGTCAAGAATACATACTTGGTTGAAGGCGGCTTTCAGTCTTGGATGAAACAAGGTCTCCGCATCAAAGAACTCAAACCTGAGACCGCACTTTCCATACTCAATGAGGAAGCTGAAGCAATTCTGGAGGAAGTTAGTCCTTCTCCTGGGCAACTATTAGGTTATGGTACGAACATCAATATTGTCTCAGAGTGGGAGAAGACATTACAGTTAATTGGTGTATTTGGCCTCGGTTTGACCATCTATTTGCGGGTTTCTTCATATGAAGACGCTGAAGATCTAAATCAAGATGTGAGGTTGTTGCTTTCTCCCGTTAGACTTGGAGCCAAAGCTTTTTCATGGGCTGCTGGAAAATTAGAATCAAATGGCTTAGGATTACCAACATCACCTTCCTCATTAGATGTTCAGAACCGGGTGTTGCAGGCTGCTGCAAAACATGAATCTCAACCATCTGATAGTGAAGGTAACCAAGATCCTGCTCCTGAATCGACAGTTTCTCTCAATCAGAATGTATGA 1887 0.4367 MRMLPVCSATPSYSTSSQIPLFGGLLPNRKDLESRLVVEEGVHLASHHGTYSLRNSFAVRAATKTVLDGFSSTSEPGGYLTSPRGYSPLTTDGHHSLRHLESYHLSTVPEGLVAFAEEQSTPQPETLSSTDIIPENFAPRLSSINVDNESLASTKASVGDFLSGINDSFKASISQGENALRSSLDTVTSFADSVGKTATKSVDNAFSKAFSAVDQTGDIANNKLTSFSSGLSGVTNKAPAVAIDLLRRAIVVVESSLTSGASYVVYLYGSAKDLLPAGIRDTVNVYEDKATEILRPVGSATQRIYTGVYSLEKTFGLDPNDPIIPFFVLVGSSATLWAFYWLWTYGGYSGDLSPKSALELLSEDANAALIDVRSEELRERDGVPDLRRAARFRYASVTPLEVDGSIRKLLKSGRDLEDSLIAVIIRNLKTVKDSSKVIVLDADGTRSKGIARSLKKIGVKNTYLVEGGFQSWMKQGLRIKELKPETALSILNEEAEAILEEVSPSPGQLLGYGTNINIVSEWEKTLQLIGVFGLGLTIYLRVSSYEDAEDLNQDVRLLLSPVRLGAKAFSWAAGKLESNGLGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGNQDPAPESTVSLNQNV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3193g00001 628 MobiDBLite consensus disorder prediction 598 628 - -
Vium3193g00001 628 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 336 479 IPR036873 -
Vium3193g00001 628 Gene3D - 348 489 IPR036873 -
Vium3193g00001 628 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 3 625 IPR044690 GO:0009704|GO:0071277|GO:0090333
Vium3193g00001 628 Pfam Rhodanese-like domain 354 474 IPR001763 -
Vium3193g00001 628 SMART rhod_4 353 478 IPR001763 -
Vium3193g00001 628 ProSiteProfiles Rhodanese domain profile. 363 481 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3193g00001 Vium-Chr3193 7966 17517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3193g00001 289 442 Sulfurtransferasese or Rhodanese AT5G23060 26.543 1.50e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3193g00001 - - gmx:100786123 1006.13