Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3190g00001 GTTCTTCAAAATGATATTGATTTGCTGAATCCTCCCGCTGAGATTGAGAAGAGGAAGCACAAACTTAAGCGTCTTGTTCAGTCCCCAAACTCTTTCTTCATGGATGTTAAGTGTCAGGGTTGCTTTAACATAACGACTGTGTTTAGCCACTCTCAGACTGTTGTTGTATGTGGGAACTGCCAGACTGTCTTGTGCCAGCCAACTGGTGGACGGGCAAGACTAACTGAGGGATGCTCTTTTAGGAAGAAGGGTGATTGA 258 0.4496 VLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3190g00001 85 ProSitePatterns Ribosomal protein S27e signature. 37 69 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vium3190g00001 85 PANTHER 40S RIBOSOMAL PROTEIN S27 1 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vium3190g00001 85 SUPERFAMILY Zn-binding ribosomal proteins 29 83 IPR011332 GO:0006412
Vium3190g00001 85 Gene3D - 4 84 IPR023407 -
Vium3190g00001 85 FunFam 40S ribosomal protein S27 1 85 - -
Vium3190g00001 85 Pfam Ribosomal protein S27 29 83 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vium3190g00001 85 Hamap 30S ribosomal protein S27e [rps27e]. 23 83 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3190g00001 Vium-Chr3190 6970 7797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3190g00001 1 85 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.118 1.70e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3190g00001 K02978 - gmx:106797809 180.259