Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium317g00008 ATGAGCGATCACACTCTTGTTATGGATGAAGATGGAGGGGATGTCCGTTCTGGGTGCATTGCGGGATTGGCTAAAGAGTATCAAAATAATGCTCAAGCAAATCTTCATATGAAAAATAAAAAAGGTGGCAAGGAAGTTGTATGTTCCAATTGCTTCGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCACCCCTCTTGTGTGGATCCTCCTCTGAAGTGCATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTGATGCAAAGGGAGTACTTTGTCAAATATCAAGGTCTTGCTCATGCTCACAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAAAGTAAACCGCAGGTTAGCTGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTACTCCTTAAAAGAGAAATTGTGAATTTTGGTGGGCATGGTGACAATGATTCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATGCCACATGGGAGTTACAAGATGCTTCGTTTTTGACATCAGCGAAAGGCAGGAAACTCATTCGTGATTATGAAAGTCGTCGAAAGGGAGTTGATAAACTGTCAAAAAGGCATTTTGAAGACAATGAGGAGACAAAAACTTTCATTGTCGAATTGTCAGTGTTGCCGTTTGGAGATTCACCAGGACTTTATAACCAATATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGTACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAAGTGATTTTGTTTGTATTATCTTTGAATTGCAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAGCAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAATAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTACAGTGAAGAAAATGGTATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTCCATGGAAAGCGATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACCATATCAAGATTTTAAACACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATATGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGGACCAAGTATTGCTCGAATGGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTTAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCCGACACACTTGGTGCGCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATCTAGATATTGGCATAAAAGCAAGCGGAAAACTGCTACTTCTTGAAAAAATTCTTTTGGAAGCAAAAAGTCGTGGGTTAAGGGTGTTAATATTGTTCCAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTATAGATTTCTATGTGCGATATGATAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATAGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTATTAAGCTTTCTTCAGTGGACATTGTTATATTGTTTGACAGTGATTTTGACCCACAAAATGACCTAAGAGGTTTACAAAGGATGTCTATCAGCACACAGTTGAAACAATTAACCGTTTTCAGATTGTACTCATATTACACTGTTGAAGAAAAGATTTTAATGCTTGCAAAGGAGGGTATATCACTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACTCTTCTAAAATGGGGCACCTCTCATCTGTTCAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTCTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGATGCTGATGATATTGATTGTCATGAATTGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATTCGAGGAACATTTTATTGCTAGGAGAAAGAATAATGAAGGAACTGGGCAGTGAGCCAAGTGCTTTTTCCTGGAGTGATCTTGAAGCAAAGTATCCTCAATGGAAATTTTTGTCTGTTCCGTCTCAGAGGATGAGGAGTAGGGTCAAACATTCTGATTACATAATAAATGAATCTGAATGTGAAGGTCATACAATTATGGGAAAGAGGACAGCATCGAATGCTTCCAAGAAGAGTAAAGTGTCCAAGGATAATTTTGATCATAATTTGAGGAAGCTGGCCAAGGATAAAGTTGAGCCCAAGAGGAGGAAAGTATCCAAAGACATTGTTGAAACAGAGGGGATGGAACCGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGGTATTGTTAAATCTGGTGGCAGGAAAATGTCCAAGAAAATTCGTGATTCCAAATATCGGAAATCAAGATTGAGGAACAAGAAGAATTCAAGTGTTTCCAATAGTACTAGTAAATCAAATGGTACAAATGGTTTGTCTAGTGTACTTGATTCCTCAGGGCATCCTTTGGCCAATGAAACTACGGGAGAAACTACTACAAACATTCAACTTTCAGAGAAAAGGAAACTGCTTGATGGACCAAATAGTATCAAATTCTTGCCAAAGTCGGATATTTCAGGTCTTTGTGAAATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCAGAGGATTCTTGAGCACATATTCAAACAGTACAATGTTAATTTCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGACATTGATAAGAAGGTTTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCAATGAAGAGGAAGCCACCAATGTCTACTCAGAACTTTGGAAACATGCAAAGACAATATCTAATTATATACAAAATGGACTGTGTGTTGAGAACTATAGTATAAATGACATGCCCGAGCTGAATGATTTGACCAAGGTGAAGCAGAAGGGTTTTCTGGATACTCGTGTTACAAAACTCACGAAATCTGTCACAAAAGAACATGATCTTCAAATGAAATCTCCCACGACAGTGGTTTCATGTGACCAGACTTCTACTTATGAAATTTGTTCATTTCCAAAGACACCCGCTAGTTTTCCTGTGAAAGCAATTGCTCTCTCCTCGGAGTCTGGCTCAGAAAACGACGTCATGGAATCTACACCCTTAATAACTTCAGAAGATTCAGCTCTGGAGCACGGGGGCAACCCTCGTACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTTTGAAGATTCTCAAATTTTAGTGAATGAATTGGTTGCTATTGAGAATTTTATGAATATGCCTATTCATTCTTTGCAGCTTGACAGTGATGATGCAAATGCGGTAACTTCTATTGGTTCTGCTGTTCCCGAGGCCAGACAGTGGGGCAGTATAATGGGTCCTGTATGTGATGAGTCAACTGGTCCGAAGTTTGCTGAGACAATCTTTCCAAATACACAACCATCGGATGCTAATTTGTGGTCGTTGCCTCTGGTTAGTAGTTTTTGTAGAAGAAGCCCTTTGGTGTTATTTTTCAAGTTTTTATTGATAATCTGTGTTTTAGAAACAAAACAACAAACTGTGGTCATTTCTTGTGTTGCTGCCTTGTGA 4149 0.39 MSDHTLVMDEDGGDVRSGCIAGLAKEYQNNAQANLHMKNKKGGKEVVCSNCFGGGVLLCCSGKGCQKRYHPSCVDPPLKCIPLRFWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVMQREYFVKYQGLAHAHNRWITESTMLLEAPKLLAKFKSKPQVSWWKRDWSIPHRLLLKREIVNFGGHGDNDSICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIRDYESRRKGVDKLSKRHFEDNEETKTFIVELSVLPFGDSPGLYNQYLSYVNKLRMCWYKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTSTALSVWEAEFLHLAPSANLVVYKGNRDVRSGIRALEFYSEENGILFQILLSSSDIVVEDLHELRCIPWKAIIIDECQQSRISGHLDHIKILNTEMKLLLVSGQIKEDRYDYIKLLSFLKSAHHGPSIARMETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDTLGALHELIISTRKCCDHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKSRGLRVLILFQSSCGSGSIGDILDDVLCQRFGIDFYVRYDRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLPSIKLSSVDIVILFDSDFDPQNDLRGLQRMSISTQLKQLTVFRLYSYYTVEEKILMLAKEGISLDSNVRLISHSISHTLLKWGTSHLFNKLDDLHASVTAVSTPDIADQTLLHDVLCELSSQLVCDADDIDCHELSFISTIQQNGGEYSRNILLLGERIMKELGSEPSAFSWSDLEAKYPQWKFLSVPSQRMRSRVKHSDYIINESECEGHTIMGKRTASNASKKSKVSKDNFDHNLRKLAKDKVEPKRRKVSKDIVETEGMEPSNHAIDPKTRKVFNGIVKSGGRKMSKKIRDSKYRKSRLRNKKNSSVSNSTSKSNGTNGLSSVLDSSGHPLANETTGETTTNIQLSEKRKLLDGPNSIKFLPKSDISGLCEILHFPKNVKVVAQRILEHIFKQYNVNFQEVSTVQAFEISVCWLAASLLKHDIDKKVSLTLAKLYLNFNCNEEEATNVYSELWKHAKTISNYIQNGLCVENYSINDMPELNDLTKVKQKGFLDTRVTKLTKSVTKEHDLQMKSPTTVVSCDQTSTYEICSFPKTPASFPVKAIALSSESGSENDVMESTPLITSEDSALEHGGNPRTDYLEKQSPIRSTDITQSDGKVFEDSQILVNELVAIENFMNMPIHSLQLDSDDANAVTSIGSAVPEARQWGSIMGPVCDESTGPKFAETIFPNTQPSDANLWSLPLVSSFCRRSPLVLFFKFLLIICVLETKQQTVVISCVAAL 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium317g00008 1382 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Vium317g00008 1382 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
Vium317g00008 1382 Gene3D - 106 162 - -
Vium317g00008 1382 SUPERFAMILY FYVE/PHD zinc finger 35 95 IPR011011 -
Vium317g00008 1382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 101 IPR013083 -
Vium317g00008 1382 SMART PHD_3 47 92 IPR001965 -
Vium317g00008 1382 MobiDBLite consensus disorder prediction 900 1004 - -
Vium317g00008 1382 Pfam SNF2-related domain 307 474 IPR000330 GO:0005524|GO:0140658
Vium317g00008 1382 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 577 742 IPR001650 -
Vium317g00008 1382 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Vium317g00008 1382 MobiDBLite consensus disorder prediction 965 1004 - -
Vium317g00008 1382 Gene3D - 490 724 IPR027417 -
Vium317g00008 1382 MobiDBLite consensus disorder prediction 948 964 - -
Vium317g00008 1382 Gene3D - 166 237 - -
Vium317g00008 1382 ProSiteProfiles Chromo and chromo shadow domain profile. 105 161 IPR000953 -
Vium317g00008 1382 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 105 1126 - -
Vium317g00008 1382 Gene3D - 274 489 IPR038718 -
Vium317g00008 1382 SUPERFAMILY Chromo domain-like 167 237 IPR016197 -
Vium317g00008 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 450 IPR027417 -
Vium317g00008 1382 MobiDBLite consensus disorder prediction 900 929 - -
Vium317g00008 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 727 IPR027417 -
Vium317g00008 1382 SMART chromo_7 170 239 IPR000953 -
Vium317g00008 1382 SMART chromo_7 104 163 IPR000953 -
Vium317g00008 1382 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 452 IPR014001 -
Vium317g00008 1382 SUPERFAMILY Chromo domain-like 67 161 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium317g00008 Vium-Chr317 37411 75282 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium317g00008 SNF2_N 8.7e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium317g00008 K11643 - gmx:100813574 1691.78