Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium317g00005 ATGAGCGATCACACTCTTGTTATGGATGAAGATGGAGGGGATGTCCGTTCTGGGTGCATTGCGGGATTGGCTAAAGAGTATCAAAATAATGCTCAAGCAAATCTTCATATGAAAAATAAAAAAGGTGGCAAGGAAGTTGTATGTTCCAATTGCTTCGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCACCCCTCTTGTGTGGATCCTCCTCTGAAGTGCATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAATAATAAAGTAAGTAGCATGTTGCTAGTGATGCAAAGGGAGTACTTTGTCAAATATCAAGGTCTTGCTCATGCTCACAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAAAGTAAACCGCAGGTTAGCTGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTACTCCTTAAAAGAGAAATTGTGAATTTTGGTGGGCATGGTGACAATGATTCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATGCCACATGGGAGTTACAAGATGCTTCGTTTTTGACATCAGCGAAAGGCAGGAAACTCATTCGTGATTATGAAAGTCGTCGAAAGGGAGTTGATAAACTGTCAAAAAGGCATTTTGAAGACAATGAGGAGACAAAAACTTTCATTGTCGAATTGTCAGTGTTGCCGTTTGGAGATTCACCAGGACTTTATAACCAATATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGTACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAAGTGATTTTGTTTGTATTATCTTTGAATTGCAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAGCAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAATAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTACAGTGAAGAAAATGGTATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTCCATGGAAAGCGATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACCATATCAAGATTTTAAACACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATATGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGGACCAAGTATTGCTCGAATGGAAACTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTTAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCCGACACACTTGGTGCGCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTGGAGCCGGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATCTAGATATTGGCATAAAAGCAAGCGGAAAACTGCTACTTCTTGAAAAAATTCTTTTGGAAGCAAAAAGTCGTGGGTTAAGGGTGTTAATATTGTTCCAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTATAGATTTCTATGTGCGATATGATAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATAGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTATTAAGCTTTCTTCAGTGGACATTGTTATATTGTTTGACAGTGATTTTGACCCACAAAATGACCTAAGAGGTTTACAAAGGATGTCTATCAGCACACAGTTGAAACAATTAACCGTTTTCAGATTGTACTCATATTACACTGTTGAAGAAAAGATTTTAATGCTTGCAAAGGAGGGTATATCACTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACTCTTCTAAAATGGGGCACCTCTCATCTGTTCAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTCTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGATGCTGATGATATTGATTGTCATGAATTGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATTCGAGGAACATTTTATTGCTAGGAGAAAGAATAATGAAGGAACTGGGCAGTGAGCCAAGTGCTTTTTCCTGGAGTGATCTTGAAGCAAAGTATCCTCAATGGAAATTTTTGTCTGTTCCGTCTCAGAGGATGAGGAGTAGGGTCAAACATTCTGATTACATAATAAATGAATCTGAATGTGAAGGTCATACAATTATGGGAAAGAGGACAGCATCGAATGCTTCCAAGAAGAGTAAAGTGTCCAAGGATAATTTTGATCATAATTTGAGGAAGCTGGCCAAGGATAAAGTTGAGCCCAAGAGGAGGAAAGTATCCAAAGACATTGTTGAAACAGAGGGGATGGAACCGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGGTATTGTTAAATCTGGTGGCAGGAAAATGTCCAAGAAAATTCGTGATTCCAAATATCGGAAATCAAGATTGAGGAACAAGAAGAATTCAAGTGTTTCCAATAGTACTAGTAAATCAAATGGTACAAATGGTTTGTCTAGTGTACTTGATTCCTCAGGGCATCCTTTGGCCAATGAAACTACGGGAGAAACTACTACAAACATTCAACTTTCAGAGAAAAGGAAACTGCTTGATGGACCAAATAGTATCAAATTCTTGCCAAAGTCGGATATTTCAGGTCTTTGTGAAATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCAGAGGATTCTTGAGCACATATTCAAACAGTACAATGTTAATTTCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGACATTGATAAGAAGGTTTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCAATGAAGAGGAAGCCACCAATGTCTACTCAGAACTTTGGAAACATGCAAAGACAATATCTAATTATATACAAAATGGACTGTGTGTTGAGAACTATAGTATAAATGACATGCCCGAGCTGAATGATTTGACCAAGGTGAAGCAGAAGGGTTTTCTGGATACTCGTGTTACAAAACTCACGAAATCTGTCACAAAAGAACATGATCTTCAAATGAAATCTCCCACGACAGTGGTTTCATGTGACCAGACTTCTACTTATGAAATTTGTTCATTTCCAAAGACACCCGCTAGTTTTCCTGTGAAAGCAATTGCTCTCTCCTCGGAGTCTGGCTCAGAAAACGACGTCATGGAATCTACACCCTTAATAACTTCAGAAGATTCAGCTCTGGAGCACGGGGGCAACCCTCGTACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTTTGAAGATTCTCAAATTTTAGTGAATGAATTGGTTGCTATTGAGAATTTTATGAATATGCCTATTCATTCTTTGCAGCTTGACAGTGATGATGCAAATGCGGTAACTTCTATTGGTTCTGCTGTTCCCGAGGCCAGACAGTGGGGCAGTATAATGGGTCCTGTATGTGATGAGTCAACTGGTCCGAAGTTTGCTGAGACAATCTTTCCAAATACACAACCATCGGATGCTAATTTGTGGTCGTTGCCTCTGGTTAGTAGTTTTTGTAGAAGAAGCCCTTTGGTGTTATTTTTCAAGTTTTTATTGATAATCTGTGTTTTAGAAACAAAACAACAAACTGTGGTCATTTCTTGTGTTGCTGCCTTGTGA 4167 0.39 MSDHTLVMDEDGGDVRSGCIAGLAKEYQNNAQANLHMKNKKGGKEVVCSNCFGGGVLLCCSGKGCQKRYHPSCVDPPLKCIPLRFWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVSSMLLVMQREYFVKYQGLAHAHNRWITESTMLLEAPKLLAKFKSKPQVSWWKRDWSIPHRLLLKREIVNFGGHGDNDSICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIRDYESRRKGVDKLSKRHFEDNEETKTFIVELSVLPFGDSPGLYNQYLSYVNKLRMCWYKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTSTALSVWEAEFLHLAPSANLVVYKGNRDVRSGIRALEFYSEENGILFQILLSSSDIVVEDLHELRCIPWKAIIIDECQQSRISGHLDHIKILNTEMKLLLVSGQIKEDRYDYIKLLSFLKSAHHGPSIARMETSFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDTLGALHELIISTRKCCDHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKSRGLRVLILFQSSCGSGSIGDILDDVLCQRFGIDFYVRYDRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLPSIKLSSVDIVILFDSDFDPQNDLRGLQRMSISTQLKQLTVFRLYSYYTVEEKILMLAKEGISLDSNVRLISHSISHTLLKWGTSHLFNKLDDLHASVTAVSTPDIADQTLLHDVLCELSSQLVCDADDIDCHELSFISTIQQNGGEYSRNILLLGERIMKELGSEPSAFSWSDLEAKYPQWKFLSVPSQRMRSRVKHSDYIINESECEGHTIMGKRTASNASKKSKVSKDNFDHNLRKLAKDKVEPKRRKVSKDIVETEGMEPSNHAIDPKTRKVFNGIVKSGGRKMSKKIRDSKYRKSRLRNKKNSSVSNSTSKSNGTNGLSSVLDSSGHPLANETTGETTTNIQLSEKRKLLDGPNSIKFLPKSDISGLCEILHFPKNVKVVAQRILEHIFKQYNVNFQEVSTVQAFEISVCWLAASLLKHDIDKKVSLTLAKLYLNFNCNEEEATNVYSELWKHAKTISNYIQNGLCVENYSINDMPELNDLTKVKQKGFLDTRVTKLTKSVTKEHDLQMKSPTTVVSCDQTSTYEICSFPKTPASFPVKAIALSSESGSENDVMESTPLITSEDSALEHGGNPRTDYLEKQSPIRSTDITQSDGKVFEDSQILVNELVAIENFMNMPIHSLQLDSDDANAVTSIGSAVPEARQWGSIMGPVCDESTGPKFAETIFPNTQPSDANLWSLPLVSSFCRRSPLVLFFKFLLIICVLETKQQTVVISCVAAL 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium317g00005 1388 SUPERFAMILY Chromo domain-like 173 243 IPR016197 -
Vium317g00005 1388 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Vium317g00005 1388 MobiDBLite consensus disorder prediction 971 1010 - -
Vium317g00005 1388 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 748 IPR001650 -
Vium317g00005 1388 MobiDBLite consensus disorder prediction 954 970 - -
Vium317g00005 1388 Gene3D - 280 495 IPR038718 -
Vium317g00005 1388 SUPERFAMILY FYVE/PHD zinc finger 35 95 IPR011011 -
Vium317g00005 1388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 101 IPR013083 -
Vium317g00005 1388 SMART PHD_3 47 92 IPR001965 -
Vium317g00005 1388 Gene3D - 496 730 IPR027417 -
Vium317g00005 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 733 IPR027417 -
Vium317g00005 1388 MobiDBLite consensus disorder prediction 906 935 - -
Vium317g00005 1388 SUPERFAMILY Chromo domain-like 67 167 IPR016197 -
Vium317g00005 1388 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Vium317g00005 1388 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 167 IPR023780 -
Vium317g00005 1388 Gene3D - 172 243 - -
Vium317g00005 1388 Gene3D - 106 168 - -
Vium317g00005 1388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 458 IPR014001 -
Vium317g00005 1388 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 107 1132 - -
Vium317g00005 1388 Pfam SNF2-related domain 313 480 IPR000330 GO:0005524|GO:0140658
Vium317g00005 1388 ProSiteProfiles Chromo and chromo shadow domain profile. 105 167 IPR000953 -
Vium317g00005 1388 SMART chromo_7 176 245 IPR000953 -
Vium317g00005 1388 SMART chromo_7 104 169 IPR000953 -
Vium317g00005 1388 MobiDBLite consensus disorder prediction 906 1010 - -
Vium317g00005 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium317g00005 Vium-Chr317 37172 75282 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium317g00005 SNF2_N 8.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium317g00005 K11643 - gmx:100813574 1685.23