Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium317g00001 ATGCCGCAATTATATAAACATTTTCATGTTCGGAGTACTCCACGTACTTTTTCTCCCTCTTTCTCTCTCTCTCTCTCTCTCACAAACACATTTAGAAGCTTGAAGAGAAGAATAATGAAGGGGAAGTTTCTGAGAGGTTGTCTTAACAAGTGGAAGAAAGTGGGGAGTCGAGTGATCCAGTGTGGTGCCTACGGTTACTGCTGCGAGTGGGAAGTGTGGCCATGGATGCAGAATGAAGGAGAATCTGATATTCCGAACGATGTGCCAAAGGGTCATTTGGTTGTGTACGTGGGAGAACACCACAAGAGATATGTGATAAAGATCACGTTGCTCCATCATCCTCTCTTCAAGACCTTGCTGGATCAGGCTCAGGATGAGTACGATTTCATTGCAGATTCAAAGCTCTATATTCCTTGCACTGAGCATCTTTTCCTCACTGTCCTTCGCTGTGCAACCTCTCCACATAATCAACGACTCTCTCTCTGCGTCTGA 492 0.4512 MPQLYKHFHVRSTPRTFSPSFSLSLSLTNTFRSLKRRIMKGKFLRGCLNKWKKVGSRVIQCGAYGYCCEWEVWPWMQNEGESDIPNDVPKGHLVVYVGEHHKRYVIKITLLHHPLFKTLLDQAQDEYDFIADSKLYIPCTEHLFLTVLRCATSPHNQRLSLCV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium317g00001 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 56 146 IPR003676 GO:0009733
Vium317g00001 163 Pfam Auxin responsive protein 79 150 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium317g00001 Vium-Chr317 2770 3565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium317g00001 82 158 Calmodulin-binding Proteins AT4G34750 41.975 2.05e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium317g00001 K14488 - gmx:100793017 216.083