Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3175g00004 ATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTTATTCCAGTGGTGGATATTTACGACTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGAATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGAACACAACGAGGCATTCGATTGCTGAAAATGGTGAAGAACAAGAAAAGGGTTCGATCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCACCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCATGACCAACCCACCCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAATCATGA 774 0.4522 MDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTTRHSIAENGEEQEKGSISTCYDYHQHQMLERSATCSPESSSSGDLDHDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3175g00004 257 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vium3175g00004 257 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vium3175g00004 257 MobiDBLite consensus disorder prediction 163 190 - -
Vium3175g00004 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 204 - -
Vium3175g00004 257 MobiDBLite consensus disorder prediction 163 184 - -
Vium3175g00004 257 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Vium3175g00004 257 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
Vium3175g00004 257 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3175g00004 Vium-Chr3175 19702 21187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3175g00004 7 250 NAC Transcription Factor Family AT3G44350 44.758 2.83e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3175g00004 NAM 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3175g00004 - - pvu:PHAVU_001G192000g 456.062