Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3174g00001 ATGGGGTTTTTGTTGAAAGAAGCTTTGAGGACTCTCTGCGGTCGGAATCAATGGTCTTACGCTGTGTTCTGGAAGATCGGTTGCCACAATTCTAAGTTATTAATCTGGGAAGAATGCTACTATGAACCTTTGCCATCCCCTCCACCCATGTTTGGGATGGGAGCTTTGCCTTACCAGAATGAGGGAGGACACTGGTTTTCTTCCGGTTCTCAGCCATCTCAACTTGGGATTGAAGAGGAGGACCGAGTCAATTATTTGATTAACAAAATGACTGTAAACAATTCGGTTATCATTGCAGGTGAAGGTACGATTGGACGGGCTGCATTTACAGGCAGCCATCAGTGGATTCTTTTGAACAGTTTCACAAAAGATATATATCCACAGGAGTTATACCCTGAAGTGCATCACCAATTTTCAGCTGGAATACAGACAGTAGCAGTTATTCCTGTACTTCCTCACGGGGTTTGTCAATTTGGTTCTTTCTTACCCATAAATGAGAATATGGGATTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTAGGATGTGTTCCTGGTGCCCTTCTATCTGAAGACTATTCGGCAAATCTCTCTATTGAACGATTTGCTGGACCTTCCATTACTGGTGTGCCAGTGTCTATCAATCCACCTGTCATTACGTCAAATTGCACTCTCTCAGTAGCTAATGCCTCCAATCAGAAAAGTAATTCATTTCATACTTCAAGGCCTTTTGTTCAAACACCTTGCCATTTAAATGCGGAGACAAGTGCATGCCAGGGTTCTGCACTGACACTGGAAACCTGTAAACTGAACCAGATACCCAGCAACCATTACCAACCAAATGTTATTCCAATGAGTGAAACACACTTTTCTGGCCAACAACGGAATGGAGCTATGGAGGCTGAAGTGATAATCTCAGATGTTGATTCATGTCAGCAGCAACATTCTGTTTCACATAATGCTAGATCTACATTCGATAACTTGACTGGTTCTGGGTCTTTTGGTCAATCTGGTCAAAGTGAGGATCATCTAACATTAATGGAGCAACAAATTATCTCAGCAATTGGGAATCGAGATAATGTTAATCCTTGTTTTAATGTGTCAAGTACCTTAAACATGCTTCATCTACACACAGATGGAGGCTACATACTTGGCCACAGTACGAGTTCTAGCAGTGCTCCCCCACTAGGAGGAATCCCAATACACGGTGGTATGAGTACTCTTTTGAGGTCAAATCTAATTACTAGTCCTGGTTCACAATCTCCCAAAGCATCCACAGATGATTTATCCAGAGAAGTTGGGATTGGACTTCAAAATTCTGATTCTTCAACTAAAGCAAGAGGTTGTTCTTCTGCTATTTCGAGTAATCAATGCAGTACCTTTCACATGCATGTAGAAGGTTCTAATCACAAGATGCTCCCTGTAGATTTAAAGTGTGTTTCAACTAATCAAAAGATAGACTATGATTTGCATCAGGCCCGTAACCTCCCCACTTTTCATGTTGAGCAACGTGTGCCCATTAGTGGTCAAATCCCTGGTCTGGCCCATGATTGTCTTAGCAAAGATGATAGTATTCAATCTATGATGGCAATGAATCCTAAACTCAAACTAGATTGTGCTAAACCTCCATCAGGTGATGACCTGTTTGATGTTTTAGGGGTAGATTTGAAAAACAAATTGCTGAATGGAAATTGGAATAAACACTTTGCAGACGAATTGGATGCAAATACAGAAAATATTGACAAAAAGTTGGAACCTATGAATATGCCGGGCACAACTACAAATCCTGATATATATTCAGTTAAAGAAGCAATATCAGACAGTGGCATATTTTCTGGGACGGGAACAGACCACCTCTTGGATGCAGTGGTCTCCAAAGCCAAATCTGTTGTAAAACAGGATTCTGATGACATGTCTTGCAGGACAACATTGACAAGGAACAGTACTTCCTCTGTTCCCTCTCCTTCCCGCAGACCGGTTATGTCTGGTAATTTCCAAGGGAGATTATTTGATTTTCCTAAGAATGGTGGTAAAACAGGTGCCACAGAAGCTAGTTTTCTTAGGTCCAGAGGTAACAAGGAAGATGCCGGAAACTGTTCTCAAACTAGTTCTACTTATGGCTCACAACTTAGTTCATGGGTTGAGAACAGTGGGAGTGTTAAACGTGAGAATAGTGTTTCTACTGGATACTCAAAGCGGACAGATGAGGCTTGCAAACCCAATCGTAAGAGGCTTAAACCAGGAGAGAATCCCAGACCTCGCCCCAAAGATCGCCAAATGATTCAAGATCGAGTGAAAGAAATAAGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTTTGGAACGGACAATTAAGCACATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTAAAACAAACGGGCGAGTCTAAGATTATTAATAAGGAAGGTGGGTTGCTTTTGAAAGACAACTTCGAGGGAGGAGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGTCCTATTGTAGTTGAGGATCTGAACCCTCCTCGTCAAATGCTAGTGGAGATGCTTTGTGAGAAAAGAGGTTTCTTTTTGGAAATAGCGGACTTAATCAGAGGATTGGGTTTAACCATATTGAAAGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCTAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTGGTTCGTCTTTTGGAGCAAACGGTGAAGGTAAAAGCATCTTCATCCAATGCAATTGATAACATGGTGTATCACACTTTTCCACAGGCTGCACAGATACCAGCAACTGGAAGGCCTAGTAGCTTGCAATGA 2871 0.418 MGFLLKEALRTLCGRNQWSYAVFWKIGCHNSKLLIWEECYYEPLPSPPPMFGMGALPYQNEGGHWFSSGSQPSQLGIEEEDRVNYLINKMTVNNSVIIAGEGTIGRAAFTGSHQWILLNSFTKDIYPQELYPEVHHQFSAGIQTVAVIPVLPHGVCQFGSFLPINENMGFVNDVKSLILQLGCVPGALLSEDYSANLSIERFAGPSITGVPVSINPPVITSNCTLSVANASNQKSNSFHTSRPFVQTPCHLNAETSACQGSALTLETCKLNQIPSNHYQPNVIPMSETHFSGQQRNGAMEAEVIISDVDSCQQQHSVSHNARSTFDNLTGSGSFGQSGQSEDHLTLMEQQIISAIGNRDNVNPCFNVSSTLNMLHLHTDGGYILGHSTSSSSAPPLGGIPIHGGMSTLLRSNLITSPGSQSPKASTDDLSREVGIGLQNSDSSTKARGCSSAISSNQCSTFHMHVEGSNHKMLPVDLKCVSTNQKIDYDLHQARNLPTFHVEQRVPISGQIPGLAHDCLSKDDSIQSMMAMNPKLKLDCAKPPSGDDLFDVLGVDLKNKLLNGNWNKHFADELDANTENIDKKLEPMNMPGTTTNPDIYSVKEAISDSGIFSGTGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPSRRPVMSGNFQGRLFDFPKNGGKTGATEASFLRSRGNKEDAGNCSQTSSTYGSQLSSWVENSGSVKRENSVSTGYSKRTDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKEIREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEKRGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKVKASSSNAIDNMVYHTFPQAAQIPATGRPSSLQ 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3174g00001 956 MobiDBLite consensus disorder prediction 735 760 - -
Vium3174g00001 956 CDD bHLH_AtLHW_like 749 818 - -
Vium3174g00001 956 MobiDBLite consensus disorder prediction 636 661 - -
Vium3174g00001 956 MobiDBLite consensus disorder prediction 694 734 - -
Vium3174g00001 956 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 950 IPR043561 GO:0003700|GO:0006355
Vium3174g00001 956 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 177 IPR025610 -
Vium3174g00001 956 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 745 794 IPR011598 GO:0046983
Vium3174g00001 956 MobiDBLite consensus disorder prediction 636 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3174g00001 Vium-Chr3174 5847 11963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3174g00001 518 950 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.174 6.73e-122 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3174g00001 - - gmx:100787748 1458.74