Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3172g00001 ATGAGTAGCGTGACTAGTGGGGGTGATGATCAGAAGATATATAGAGGTTATCAGTCATCATCATTGGATGAAGAAGCTGGTGTTGGAGTTAACACGGGAGGAGAAGTTCCTCTAAAGAAAGGCCCCTGGACTGCAGGAGAGGATGCAATTTTATTAGAATATGTTAGTAAGCATGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGTTGCCGTCTACGGTGGGCGAATCACTTGAGACCGGATCTGAAAAAGGGTGCATTTACCCAAGAGGAAGAGAACCGAATCCTTGAGCTTCACGCAAAACTGGGAAACAAATGGGCTCGGATGGCTTCTGAGTTGCCTGGACGTACTGATAATGAAATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCCGGCTTACCAATATACCCTCCTGAAATATGTGAGCGGATACTTAATGGAAATCAAGAAAGTAAAAATATTGATCCCTTGAATATTGAAGCATCCCAGCATGATAATCTATCACAAACGGACAAATTTGGTATACCAGATATGGATTTGAAGACTTTCAAATTTCATCATGATTCATCACAGGTACCAGGAATTTTTGATATGCCTGAAAACTTGTTTGAGCAAAGTTCAGATTCATCTTATTTGTTCCCAACAATTTATCCTTCAAAACGTCGTCGGGAGTCAGAAACTCTATACAATAGTTTTGCTAGTTGTACAAGTAATTCTCTCCCACTATTTGATCAGTATGGCAATTATACTGGTGAGAAAACTTACGACCATCCTAGTTTCTATCGTCCTTTTGATCCTGTTTTTAGCAGCAGTAATCAGTTTCATGGTGGTAACATAAACGGCAGCCATGCCATGTTAAATGGCAATGTTTCTTCTTCCGTGCCCTTTTTTGGGGCTAGGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAACATGGTAGTTGGATCACACATGGGTCCCCGCTTCCATCACTTGAGTCTGTAGATACAATGATTCAGTCTCCTCCAGTTGAGTCTATTCCATCAGATCTCATTTCTCCACAAAGCAGTGGTTTGTTGGAAGCGATAGTCTACAACTCGAAGAGCATGAAAAACTCGAATACTGATTTATTTTTGCCAGTGATAACCGGTACATCCAATGAAGCAGCTGGGAGTTCAACCTTGAATCATCCCTATAAGACAGAATGGGATGAGCAAGGGGAATTAAACTCCCCTTTCGGTCAATCTGCTGCTTCAGTTATGACTGACTACACTCCAATAAGTTCAGTAGATGGACCCCAATCAATTGAAACCACTCAAGATCATGATGACAAGCTCCAAGCACTCACCTGTGTCCCAAATAGTTCCAGGAAGAAACGTAAATCGGAACAGTTTGATTTTTCACAGAGTCCTGATGCTTTATTTGACTTAGCTTGGTTTGGAAATAATACTGACTATGGAATTAGTCAATCTGATCTAAAAGATGCTCTAAGTGCACTGCTTGGTGAAGATTACAATGATAACTTTGGTGAACATAGCAAGGGTAAGCAGTAG 1578 0.4119 MSSVTSGGDDQKIYRGYQSSSLDEEAGVGVNTGGEVPLKKGPWTAGEDAILLEYVSKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTQEEENRILELHAKLGNKWARMASELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPEICERILNGNQESKNIDPLNIEASQHDNLSQTDKFGIPDMDLKTFKFHHDSSQVPGIFDMPENLFEQSSDSSYLFPTIYPSKRRRESETLYNSFASCTSNSLPLFDQYGNYTGEKTYDHPSFYRPFDPVFSSSNQFHGGNINGSHAMLNGNVSSSVPFFGARKLELPSLQYTETQHGSWITHGSPLPSLESVDTMIQSPPVESIPSDLISPQSSGLLEAIVYNSKSMKNSNTDLFLPVITGTSNEAAGSSTLNHPYKTEWDEQGELNSPFGQSAASVMTDYTPISSVDGPQSIETTQDHDDKLQALTCVPNSSRKKRKSEQFDFSQSPDALFDLAWFGNNTDYGISQSDLKDALSALLGEDYNDNFGEHSKGKQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3172g00001 525 FunFam MYB-related transcription factor 39 92 - -
Vium3172g00001 525 Gene3D - 39 92 - -
Vium3172g00001 525 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Vium3172g00001 525 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Vium3172g00001 525 CDD SANT 95 136 IPR001005 -
Vium3172g00001 525 SMART sant 39 89 IPR001005 -
Vium3172g00001 525 SMART sant 92 140 IPR001005 -
Vium3172g00001 525 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Vium3172g00001 525 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Vium3172g00001 525 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 503 - -
Vium3172g00001 525 FunFam Transcription factor MYB97 95 169 - -
Vium3172g00001 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Vium3172g00001 525 Gene3D - 95 167 - -
Vium3172g00001 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Vium3172g00001 525 CDD SANT 42 87 IPR001005 -
Vium3172g00001 525 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3172g00001 Vium-Chr3172 18373 23530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3172g00001 38 523 MYB Transcription Factor Family AT5G06100 39.243 1.11e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3172g00001 Myb_DNA-binding 6.9e-14 CL0123