Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3164g00002 ATGCCACAAATAATGAGGTTTTCACCACTCGTAGTTGTGTTGGTTTTCTGTTTTTCTCCTATGCTGGTAGTCCTTGGTCTGGGCTCAGATCACACTACTTTGGGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGAAAGACCCACGAAATGTTCTGAGTGATTGGACAGAGGATAACATTGACTACTGCAGTTGGAGAGGGGTGTCATGTGAATTGAACTCAGACTCAAACACAATTTCAAACTCTTTAGATGGTAACTCCATGCAAGTGGTGGGTCTCAATCTTTCTGACTCGTCACTCACCGGGTCAGTGTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACAGGTCCCATTCCACGTAATCTCTCCAACCTAACTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATACCCGAAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATTCCCGCGTCTCTCGCCAACCTGGTCAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGGTCTATTCCAAGGCAACTTGGTCAACTCAAGCTCATGGAGAATCTGATTCTGCAAGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTAGGGAACTGCTCAAGCCTCACCGTCTTCACTGCAGCTAACAACAAACTCAATGGATCAATACCCATTGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGTATATCTGGGGAGATTCCGAGTCAACTCGGTAATATGAGTCAACTCGTTTACCTGAACTTCATGGGGAACCAGTTAGAGGGTACCATTCCTCCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCAATGAACAAGCTCAGTGGAGGAATGCCAGAGGAGTTGGGCAACTTGGGTGAGCTGGCTTATATGGTTCTGTCTGGTAACAACCTTAATGGTGTCATACCAAGGACCATATGTTCCAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTTCATGGGGAGATTCCAGCTGAGTTGAGTCAATGCCAGCAACTGATGCAACTCGATTTGTCCAACAATGCACTCAACGGGTCCATACCTCTTGAGCTTTATGAGTTGCTGCGGTTAACTGATCTCTTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTCCATAGGGAACCTCAGTGGCTTGCAGACACTCGCTTTGTTTCACAATAACTTGGAGGGTGTTCTGCCTAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAACCAATTGTCAGGGTCTATACCTACGGAAATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTCGGAAACCATTTCAGTGGGGAAATTCCAGTCACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTTGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAGCATTCTAGATTTAGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACGTTTGGATTCCTCAACGAATTACAGCAACTCATGATCTACAACAATTCCCTTGAAGGTAATCTCCCTCACCAACTGATCACCGTAAAAAACTTGACCAGAGTGAATCTTTCTAAGAACAAATTGAATGGTAGTATATCTGCGTTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGAGGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTACGATTAGGTAACAACAACTTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTACTAGACCTCTCAGGAAATTCACTCATTGGACCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAGCAGTAACTTTCTTTTCGGACATATACCATTATGGCTTGGAAGTTTCTCTCAGTTGGAAGAGCTCAAACTCTCCTCCAATAACTTTTCTGGGCCACTTCCATTAGGCCTATTCAAATGTTCTAAGTTGCTTGTTCTCTCTCTAAATGACAACTCCGTGAATGGAACTCTCCCATCTGATATTGGTGAACTTGCAAACCTAAATGTCCTCAGACTTGAGCACAATAAGTTTTCTGGACCAATCCCTCTGGAGATAAGCAAATTGACCAAGCTTTATGAGCTCCGGCTCTCAAGAAATGGATTTAATGGTGAGATTCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAACCTCTCAGGTATCATCCCACTTTCTCTTGGGAAACAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCAACTAACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGGAAGCTTGACCTCTCTTACAACAACCTTCAAGGAAAATTGGATAAGCAGTTTTCCGGTTGGCCAGACCAGGCATTTGAAGGAAACATACATCTTTGTGGAAGCCCTCTTGAGAGCTGCCACAGAAATGACGACTCTGAAAATGCAGGCCTGAATGAATCAACAGTAGTGATAATCTCTTCCCTTTCAACTTTCGCTGCAATTGCACTTCTGATACTCGCAGTCCGAATCTTTTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGTGAAGTGAATTATGTTTACTCCTCTTCTTCTTCATCACAAGCACAGAGAAGACCACTGTTCCAACTAAATGCAACTGGAAATAGAGATTTCAGATGGGAAGACATCATGGATGCTACGAACAATCTAAGTGAGGACTTCATGATTGGTTCAGGCGGCTCAGGGAAAATCTACAAAGCTGAATTGGCATCTGGAGAGACTGTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGGCACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAACAGAAACAAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCGGCCAAGGAGAGCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTGGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAATGTATTGCTAGACTCAAAAATGGAGGCGCACTTGGGAGATTTTGGACTGGCAAAAGCACTAACCGAGAACTATGACTCTAATACTAATACTGACTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCCCAACGGGCAGCAGAAAAAAGTGACGTTTACAGCATGGGAATAGTACTGATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATTTTTGGAGCTGAGATGAACATGGTGAGATGGGTAGAAATGAACGTGGATATGCATGGTTTTACCAGTGAGGAATTGATAGATCCTGAACTGAAACCTCTTTTACCTGACGAAGAGTTTGCCGCATTCAAAGTGCTTGAGATAGCCTTGCAATGCACGAAAGCTACACCACACGAGAGGCCATCTTCGAGGAAAGCATGCGACCTTCTCCTCCATGTATTCAACAACAGGATGGTGAACTTTGAGAAGATGAATTTGGAAAATTGCAAATGA 3825 0.4358 MPQIMRFSPLVVVLVFCFSPMLVVLGLGSDHTTLGVLLEVKKSFVKDPRNVLSDWTEDNIDYCSWRGVSCELNSDSNTISNSLDGNSMQVVGLNLSDSSLTGSVSPSLGRLQNLLHLDLSSNSLTGPIPRNLSNLTSLESLLLFSNQLTGHIPEEFGSLKSLRVMRLGDNALTGTIPASLANLVNLVNLGLASCGLTGSIPRQLGQLKLMENLILQDNELMGPIPTELGNCSSLTVFTAANNKLNGSIPIELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNFMGNQLEGTIPPSLAQLGNLQNLDLSMNKLSGGMPEELGNLGELAYMVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELSQCQQLMQLDLSNNALNGSIPLELYELLRLTDLLLNNNSLVGSISPSIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGSIPTEIGNCSSLQMIDFFGNHFSGEIPVTIGRLKELNFLHLRQNELVGEIPATLGNCHKLSILDLADNQLSGAIPATFGFLNELQQLMIYNNSLEGNLPHQLITVKNLTRVNLSKNKLNGSISALCSSQSFLSFDVTDNEFEGEIPSQMGNSPSLERLRLGNNNFSGEIPRTLGKIRELSLLDLSGNSLIGPIPAELSLCNKLAYIDLSSNFLFGHIPLWLGSFSQLEELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSVNGTLPSDIGELANLNVLRLEHNKFSGPIPLEISKLTKLYELRLSRNGFNGEIPAEIGKLQNLQIILDLSYNNLSGIIPLSLGKQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDLSYNNLQGKLDKQFSGWPDQAFEGNIHLCGSPLESCHRNDDSENAGLNESTVVIISSLSTFAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSSQAQRRPLFQLNATGNRDFRWEDIMDATNNLSEDFMIGSGGSGKIYKAELASGETVAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKAGWNLLIYEYMENGSVWDWLHGKPAKESKVKRSLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTNTDSNSWFAGSYGYIAPEYAYSQRAAEKSDVYSMGIVLMELVSGKMPTNEIFGAEMNMVRWVEMNVDMHGFTSEELIDPELKPLLPDEEFAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMVNFEKMNLENCK 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3164g00002 1274 Gene3D Ribonuclease Inhibitor 192 296 IPR032675 -
Vium3164g00002 1274 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Vium3164g00002 1274 SUPERFAMILY RNI-like 595 847 - -
Vium3164g00002 1274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1097 1109 IPR008271 GO:0004672|GO:0006468
Vium3164g00002 1274 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 493 1254 - -
Vium3164g00002 1274 SUPERFAMILY L domain-like 322 676 - -
Vium3164g00002 1274 Gene3D Ribonuclease Inhibitor 398 570 IPR032675 -
Vium3164g00002 1274 Gene3D Phosphorylase Kinase; domain 1 927 1046 - -
Vium3164g00002 1274 FunFam Uncharacterized protein 396 489 - -
Vium3164g00002 1274 ProSiteProfiles Protein kinase domain profile. 967 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3164g00002 1274 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Vium3164g00002 1274 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 209 280 - -
Vium3164g00002 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 296 395 - -
Vium3164g00002 1274 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Vium3164g00002 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 587 879 - -
Vium3164g00002 1274 Pfam Leucine rich repeat 761 821 IPR001611 GO:0005515
Vium3164g00002 1274 SMART LRR_sd22_2 783 805 - -
Vium3164g00002 1274 SMART LRR_sd22_2 111 137 - -
Vium3164g00002 1274 SMART LRR_sd22_2 400 426 - -
Vium3164g00002 1274 SMART LRR_sd22_2 303 329 - -
Vium3164g00002 1274 SMART LRR_sd22_2 448 474 - -
Vium3164g00002 1274 SMART LRR_sd22_2 255 281 - -
Vium3164g00002 1274 FunFam Leucine-rich repeat receptor-like protein kinase 1047 1271 - -
Vium3164g00002 1274 Gene3D Ribonuclease Inhibitor 584 884 IPR032675 -
Vium3164g00002 1274 SMART LRR_typ_2 496 520 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 424 447 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 255 279 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 735 759 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 303 326 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 159 183 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 687 711 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 111 134 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 135 158 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 783 807 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 327 351 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 832 863 IPR003591 -
Vium3164g00002 1274 SMART LRR_typ_2 448 472 IPR003591 -
Vium3164g00002 1274 Pfam Protein kinase domain 972 1251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3164g00002 1274 SMART serkin_6 967 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3164g00002 1274 Gene3D Transferase(Phosphotransferase) domain 1 1047 1268 - -
Vium3164g00002 1274 PRINTS Leucine-rich repeat signature 832 845 - -
Vium3164g00002 1274 PRINTS Leucine-rich repeat signature 811 824 - -
Vium3164g00002 1274 Gene3D Ribonuclease Inhibitor 297 397 IPR032675 -
Vium3164g00002 1274 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 204 - -
Vium3164g00002 1274 SUPERFAMILY L domain-like 38 361 - -
Vium3164g00002 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 927 1046 - -
Vium3164g00002 1274 SUPERFAMILY Protein kinase-like (PK-like) 949 1254 IPR011009 -
Vium3164g00002 1274 ProSitePatterns Protein kinases ATP-binding region signature. 973 996 IPR017441 GO:0005524
Vium3164g00002 1274 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 490 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3164g00002 Vium-Chr3164 26436 31056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3164g00002 36 756 Receptor kinase-like Gene Family AT1G17750 35.124 1.69e-102 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3164g00002 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3164g00002 - - gmx:100801889 2087.38