Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3164g00001 ATGGGTTTAGCGGCACCTTATTCCGTTGGAACAAGCCTCCCTTCCCTTCAACGCCTTCCTTCCCTGAAACCCCAAATCTGTAACAGTTATTCATCTCCTGTTAGTTCCCACCGTCATGTGAAATGTGCTCTCCAACTTCAACCACAAACACCACCACCGACAACAACTGTAACAGTGGCACCGGACGAGAGCCTCGTGAAGAGAAGAACTGTTATAGGCCTTTTTGCATTTGATGCTGTCCTTGCTTATTCTTCCTTAAATTCATCACCAGCAGCTGAAACTCCATGTGAATTTCAAGTGGCACCTTCTGGTCTTGCCTTCTGTGATAAACTTGTGGGAGCAGGTCCTCAGGCAGTCAAGGGATAACTTATTAAGGCGCATTATGTGGGGAGATTGGAGAATGGGAAAGTTTTTGACAGCAGCTATAATCGTGGCAAGCCACTAACGTTTCGCGTTGGTGTTGGAGAGGTGATTAAAGGTTGGGATGAAGGCATTATTGGAGGTGATGGAGTTCCTCCCATGCTTGCAGGAGGGAAACGTACCCTGAAGATTCCTCCAGAACTTGGATATGGCTCAAGAGGAGCTGGTTGTCGAGGAGGTTCATGTATCATTCCTCCTGATTCAGTGCTATTGTTCGATGTGGAGTTCGTTAGCCAAGCATGA 663 0.4721 MGLAAPYSVGTSLPSLQRLPSLKPQICNSYSSPVSSHRHVKCALQLQPQTPPPTTTVTVAPDESLVKRRTVIGLFAFDAVLAYSSLNSSPAAETPCEFQVAPSGLAFCDKLVGAGPQAVKGXLIKAHYVGRLENGKVFDSSYNRGKPLTFRVGVGEVIKGWDEGIIGGDGVPPMLAGGKRTLKIPPELGYGSRGAGCRGGSCIIPPDSVLLFDVEFVSQA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3164g00001 220 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 116 216 IPR001179 GO:0003755
Vium3164g00001 220 SUPERFAMILY FKBP-like 97 218 - -
Vium3164g00001 220 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 121 220 IPR001179 GO:0003755
Vium3164g00001 220 FunFam Peptidylprolyl isomerase 93 219 - -
Vium3164g00001 220 Gene3D - 93 219 IPR046357 GO:0003755
Vium3164g00001 220 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 90 218 IPR044183 GO:0009507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3164g00001 Vium-Chr3164 6551 9642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3164g00001 87 218 Calmodulin-binding Proteins AT5G48570 37.778 3.32e-17 77.8