Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00007 CATCAGCCAAAGGTATGGAGATTTGTGTGTTTTGCTTCATCTATCGTTGGCCTTATCTGTTACGCTTTGAGCTCATCTTTCAATCATTTACATGGAAATTGGACCTGGTGGAAGTTACTTCTTTACATTATTTTCAGTTTTTTAATTTCCCTTTCTACCTTGTTTGCAAAGACATGGGAATACTCCAACTCTCGCTGTTTGGAAGCTCACACAGCATTTTTAATTTTGCTTATCACTTCTGTATACTCTTTTTTCCTTGATAGATATCTGAAACAGAAAGGAGATGGCTATAGTCTGCTTTCTTGTGTTGCCTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGTTAGGATTTGAGGTTGATCTCCTGTATTTTTTCTGTGGACTTCTGACCGTACAACTCATGAAAATAAAACCGTGGTTAGTCACTGTTGGAGGAGCTTTCAGTTATTCCCTCATCATTCTTCGTTCCAATTTGGATCCTCAACCAAGAAGTGGGTATCATGGAATTCAATACCAAGATCATGTAGTGATTGAAATTGGTTCTCATTCACAACCACAAAGAACCATTAATAGTGTTACTAAAGTGGATTCAACCCAAACAATTATGGCCAGTTCACAACCACACCCTGTCATTGATAAGGTATGGCCTTCAAGAGGAACAAGGCATAGTGCTTCTCAAGTAGTTTCACCTCAAGAGGGTGGTGCCGGTGGTGCCCCTCCAGAAAACATTTATGGTACCAAAGAATGCTTTATAGGTTGTATAGAGGCTCTTCAGAAGGAGAATAGGAGCGTTATCAGAGCAATTTCCATGCATGTAGACAAATACGTTAAAGCTAGTGTTCATAGTGAGGAGAAGATTTCAGTGCCAGAATTGCATGGCGACGACAACATGGTGGTGGATTCATTGTCGTCAGGAATGATCGCCAAGCTTCGTCAAAGTATACAGAAGATGGTGTCAGATGGATTTGAGGAGGAATGCTTGAACGTGTACAGTAATTGGCGGAGGGAGTTTCTCAAAGAGAGTCTCCGGGTATTAGGGTTGCAGAATCAAGAGCTCAACGGGGAGGACATTAACAAGTCGGAGAAGGATGAGAGGCTGATAACAGCTATGAACATAGCTACGAGGATACTCTTTCCCAATGAAAAAGGATTCTTCAATCGTGTCTTTAGCGGCTCCATTCGCAATGGGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGCTACTGGTCTGCTGAACTCTGCCCTTGCCTTGGCAACATGGAGTCTTTTCATGCGCAACACATTGCAGGAGTTGATACATGAGTTTGAATCATTTACAATACTAAGAAATATTGTAGTGGTCCTGATAAGACAGAGATTGTGCATTTATGAGGCTTTGGAAGATGTATCACTCATTCCGGGTGGCGGGATTCATCCCCTTACCCTTGAAGGGATGTGCTTTATTTATTTGGTTTACAGAAATAGGGAAATTAGGAAACTTAGGCGAGATTTAAAGGAGGGAAAGATTCCAGCATCTGTGTACATAGACAAAGTGAGAATTCGTTTAAAGTGTAGTTTGGACCATAAGTCCAAAAATGGTAATAAGTTTCATGTGATGAACTACAATGAATCTCCACACCAAAGTTTCCTTGGCACATTTGAGGAATTTGTTGGGGAGCATGTTTATAAATACATTAAGTATGGAAAGTCTGAGGCACATGATCGACTCAGCAAATTGTTTCTTTTAATGGAGTAG 1746 0.4089 HQPKVWRFVCFASSIVGLICYALSSSFNHLHGNWTWWKLLLYIIFSFLISLSTLFAKTWEYSNSRCLEAHTAFLILLITSVYSFFLDRYLKQKGDGYSLLSCVAFAIMSLGLSRLSQLGFEVDLLYFFCGLLTVQLMKIKPWLVTVGGAFSYSLIILRSNLDPQPRSGYHGIQYQDHVVIEIGSHSQPQRTINSVTKVDSTQTIMASSQPHPVIDKVWPSRGTRHSASQVVSPQEGGAGGAPPENIYGTKECFIGCIEALQKENRSVIRAISMHVDKYVKASVHSEEKISVPELHGDDNMVVDSLSSGMIAKLRQSIQKMVSDGFEEECLNVYSNWRREFLKESLRVLGLQNQELNGEDINKSEKDERLITAMNIATRILFPNEKGFFNRVFSGSIRNGEFHFRELCTELATGLLNSALALATWSLFMRNTLQELIHEFESFTILRNIVVVLIRQRLCIYEALEDVSLIPGGGIHPLTLEGMCFIYLVYRNREIRKLRRDLKEGKIPASVYIDKVRIRLKCSLDHKSKNGNKFHVMNYNESPHQSFLGTFEEFVGEHVYKYIKYGKSEAHDRLSKLFLLME 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00007 581 Gene3D Exocyst complex component Exo70 245 536 - -
Vium3162g00007 581 SUPERFAMILY Cullin repeat-like 288 528 IPR016159 -
Vium3162g00007 581 PANTHER EXOCYST COMPLEX PROTEIN EXO70 249 528 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00007 Vium-Chr3162 38599 40344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00007 288 493 EXO70 exocyst subunit family AT5G58430 33.891 1.75e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00007 - - vra:106763387 853.973