Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00006 ATGACTTCTGTGTACTCCTATTTCGTTGATACAAAAGTGAAAGGAAAACCGGATGTGTATAGCGTAGTTTCGAATGCTGCATTTGCTATTATGTCTTTGGGTTTATCAACTTTTAGTCCCTTTGGATTCGAGGTTGATCTCCTGTATTTTTTCTGTGGAGTTCTAATAGTGCAGCTCATGAAAATTAAACTATGGTTGATCATTGTTGGAGGGTGTTTCAGTTATTCCCTCAACATTATTCATTCCACTTTAGATACTCAACGCTCATATGATCTTCTAGGCATTACCATTGATCCACAATCACAATCACAAGTAAGCACTGGTAGTGTTTCTCCACCTGATTCACCCCGTGTTCATGTTCCTGTTCCTCCCCAAGCTGATCCTATCCCCCTTGGTTCACCATTACAACGAGGCAATAGTCGTAGAGTTCTTGCCAGAAGGGACTTTATGAGTTATATAGAAGAGCTTGAAAAGGAGAATGAAAAGGTTATCAACACAATTTTGAAGCTTGTGGGTGGATACCTTAAGGCTAATGTTGTGAATGAAGATCAGATTGCAGTGCCGGAAATACAAGCTGACGACAACTTGGTGAAAGACATGTTACCGTCTGACCTCATCGACAAACTTCGTTACACCGGGAAGCTGATGTTTCAGAATGAGTGCCGCAGTTTGTACAGCAGTTGTAGGAGGTTGTTTCTAAAGGAGTGTTTATCAAAACTCGGGCTGGAAATTGAAGAGCTCAATGTGGAGGACTTTGACAAGATGGAGAAGATAGGGAGTTTGATAAAAGCTTTGAACATAACCGTGAGAATACTGTTTCCCAATGAAAGGATTCTCTGTGCTCACGTATTCCCCGAGTCTTACAATGCAGATATCTCATTTGCTGAGGTTTGCACTGAATTGAGTATCAGTCTGTTAAGATTTGTGAATACACTGGCAACTGAGAATCATCAATGGTCTTACCATCTGGTCCATGTCATTCCCAACGTGTTCAAGACTTTGATTGATCTGATTCCAATGTTCGATTCACTGTTTTATGGTCAGTTGTTTAGTGAATCACTCAGAAATGGTGCAATTCTTGTCGGGAAGAGATTGGGTGTTTTTGTTGAGTTGGAGAGTCTCATTCACCGTGAAGTGGCTAAGGAGACTGATCCCAATGGTGGGATTCATCCAACAACCCACAGAGTGATGGATTATCTGAGAGAAGTTTTCACAGATGATGAGACTTTCCCAATTAGAAGAGGAATATCTTCATTATCAGATCAGGTAGCTAGAATAATTAAAGTTTTAGACACAAATTTGGAAGCCAAGTCCAAAAGCTACACAAACCCAGCATTAGGCCATGTTTTTATGATAAATAATTTGATGTTTTTACAATTTGGGGAATATTATATATATGGAGAGATTTTAGGCCAAGGTTGGTACAAGTCAAAGATCGACGAGCACATTGAACTCTATCAAAGAAGCTCGTGGGAAAAGATATTAGAGCTTTTGAAAGTAAGCAGTAGAGAACTGCATGCAGAGTCTATGAAAAAGAAGCTGAAATTGTTCAACCAGCAGTTCAATGAGATATGCAAAGCTCAGTCTGAGTGGTTAATATTTGATGATGAGCTGAGGGAAGTTGTCGTAAAATCCGTAGAGAACACATTGTTGCCTACATATGGGACCTTTATTGGAATGATTCATGATGTTGTTGGTAAAGATGCTTATAAGTTCATTAGGTATGGAATTCAGAACATTCAAGATCGCTTGAGTCATTTGTTTTCTGTAAAAATAGCTGAGGGCTGA 1788 0.3949 MTSVYSYFVDTKVKGKPDVYSVVSNAAFAIMSLGLSTFSPFGFEVDLLYFFCGVLIVQLMKIKLWLIIVGGCFSYSLNIIHSTLDTQRSYDLLGITIDPQSQSQVSTGSVSPPDSPRVHVPVPPQADPIPLGSPLQRGNSRRVLARRDFMSYIEELEKENEKVINTILKLVGGYLKANVVNEDQIAVPEIQADDNLVKDMLPSDLIDKLRYTGKLMFQNECRSLYSSCRRLFLKECLSKLGLEIEELNVEDFDKMEKIGSLIKALNITVRILFPNERILCAHVFPESYNADISFAEVCTELSISLLRFVNTLATENHQWSYHLVHVIPNVFKTLIDLIPMFDSLFYGQLFSESLRNGAILVGKRLGVFVELESLIHREVAKETDPNGGIHPTTHRVMDYLREVFTDDETFPIRRGISSLSDQVARIIKVLDTNLEAKSKSYTNPALGHVFMINNLMFLQFGEYYIYGEILGQGWYKSKIDEHIELYQRSSWEKILELLKVSSRELHAESMKKKLKLFNQQFNEICKAQSEWLIFDDELREVVVKSVENTLLPTYGTFIGMIHDVVGKDAYKFIRYGIQNIQDRLSHLFSVKIAEG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00006 595 Gene3D Exocyst complex component Exo70 144 593 - -
Vium3162g00006 595 SUPERFAMILY Cullin repeat-like 181 588 IPR016159 -
Vium3162g00006 595 Pfam Exo70 exocyst complex subunit 262 585 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3162g00006 595 PANTHER EXOCYST COMPLEX PROTEIN EXO70 196 588 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00006 Vium-Chr3162 33071 34858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00006 181 588 EXO70 exocyst subunit family AT5G58430 40.674 2.17e-87 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00006 - - vra:106763398 1097.8