Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00005 ATGTCACTAGGCTTGTCAAGACTCAGTCACTTTGAATTTGAGGTCGATCTTCTATATTTTTTCAGTGGATTTCTGAGAGTACAACTCATGAAAATAAAATTATGGTTGGTAATTGTGGGAGGGAGTTTCAGTTATTCCCTCATCATTTTGCATTCAGCGTTGGATGCTTCAGCCAGAACTGGGTATGTTGGACTCCATGTCAATGATGACGTAGTCATTGAAATTTTTTCACACTCTCAAGGAACAAGCCGCAATTTTTCACAAGTTGTTTCACCTCAAACTATTCCCATTGTCGGTAATTCCCTCGTCATGCCGCAAGACGTTGTTGTCTCTGAAGGAGATGAGGATTCAGGATTCACTCAAGGCAAAAATGTCAGTAAAAAAAGTATAATGGCACGATTCATGGAATGTATAGAGGTGCTTGAGAAGGAGAATGAGACCCTTATCAGCACAATTTCAAAGCATGTAGATGGATACCTTAAAGCTAATGTGGTCAAGAAGATTCCAACGGTGGAACTCCATGCTGACATCAACTTGGTGGTTGATGCATTGCCTGCTGGAATCATCAACGACCTTCACGAAGCCGTGTCGCTGATAGTGGCTGAAGGGTTTGAGGAGGATTGTTGCAGAGCATACTATACTTGCCGAAGGGAGTTTCTGAAAAAGTGTTTATGGACTTTTTGGTTGCAAACGCAAGAGCTTTGCATGGAGGACATTGATGAGATGGAGAAGATTCAGAGTTGGTTAACAAAGGTTTTGTATGTAGTTGATAGTGTACTCCTTCCCAATGAAAGGACACTCTGTGATCGCGTCTTTAAAGGAGTCTCTTCCGCTGGGGATTATGCTTTCACTGTGGTTTGTAGAGAATTGAATATTTGTTTGATTCGCATTGCCAATCACTTGGCAACTATTCTGGAGGATAATAAATCTAGGCAAGTATTAGAAGAATACACCATGTTTGATAAGGAGGAAAAGCTTTCACTGTCTGGGAATGTGGCCAGGATAATAGCAACAGCCCTGATAGACAGAATTTTGGAAGTGGAGTCCAAAAATTACCATAATCCTTCTCTAGGATATGTTTTCATCATGAACAATTTGAGTTTCATAGAACTGGAAGCAGAATTCTATGGGTTGGTTCCTATTTTCAGTCATGATTGGCTCCGGAAAATCGAAACAAAATTCCAGCAAAACCTTGAACTTTATATGAGAAGCTCGTGGAATAAGATTGTGGACTTTCTGAAGTTTGATATCTGTGAATCAGAGACAAGTGTTGCGGTTGGGTTACTGAAAGACAGGATAAATTCGTTCAATGAACACTTTGACGATATATGCAATGTTCAGTCTACTTGGTTTGTGTTTGATGAAGAGTTAAGAAAACATATTGTAAAATCCATAGAAAACATGTTGTTGCCAGCATATGGAAATTTCATTGGAAGGTTGCAGAATTTTCTTGGCAAACACAGTTATAATTATATTAAGTATGGAATGTTTGACGTCCTAGATCGAGTCGGCAATCTGTTTGTTGTGACGAAGAATAAGAATCTGTATCTGAAACACAAGTGGAAGAGACCCAAGCGCTTGCGTTGA 1587 0.3963 MSLGLSRLSHFEFEVDLLYFFSGFLRVQLMKIKLWLVIVGGSFSYSLIILHSALDASARTGYVGLHVNDDVVIEIFSHSQGTSRNFSQVVSPQTIPIVGNSLVMPQDVVVSEGDEDSGFTQGKNVSKKSIMARFMECIEVLEKENETLISTISKHVDGYLKANVVKKIPTVELHADINLVVDALPAGIINDLHEAVSLIVAEGFEEDCCRAYYTCRREFLKKCLWTFWLQTQELCMEDIDEMEKIQSWLTKVLYVVDSVLLPNERTLCDRVFKGVSSAGDYAFTVVCRELNICLIRIANHLATILEDNKSRQVLEEYTMFDKEEKLSLSGNVARIIATALIDRILEVESKNYHNPSLGYVFIMNNLSFIELEAEFYGLVPIFSHDWLRKIETKFQQNLELYMRSSWNKIVDFLKFDICESETSVAVGLLKDRINSFNEHFDDICNVQSTWFVFDEELRKHIVKSIENMLLPAYGNFIGRLQNFLGKHSYNYIKYGMFDVLDRVGNLFVVTKNKNLYLKHKWKRPKRLR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00005 528 PANTHER EXOCYST COMPLEX PROTEIN EXO70 176 314 IPR004140 GO:0000145|GO:0006887
Vium3162g00005 528 Gene3D Exocyst complex component Exo70 115 322 - -
Vium3162g00005 528 SUPERFAMILY Cullin repeat-like 138 507 IPR016159 -
Vium3162g00005 528 Pfam Exo70 exocyst complex subunit 324 495 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3162g00005 528 Gene3D Exocyst complex component Exo70 388 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00005 Vium-Chr3162 25110 26784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00005 312 510 EXO70 exocyst subunit family AT5G58430 39.303 6.93e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00005 - - vum:124833390 1058.13