Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00004 ATGAACAATTTGAGTTTCATAGAACTGGAAGCAGAATTCTATGGGTTGGTTCCTATTTTCAGTCATGATTGGCTCCGGAAAATCGAAACAAAATTCCAGCAAAACCTTGAACTTTATATGAGAAGCTCGTGGAATAAGATTGTGGACTTTCTGAAGTTTGATATCTGTGAATCAGAGACAAGTGTTGCGGTTGGGTTACTGAAAGACAGGATAAATTCGTTCAATGAACACTTTGACGATATATGCAATGTTCAGTCTACTTGGTTTGTGTTTGATGAAGAGTTAAGAAAACATATTGTAAAATCCATAGAAAACATGTTGTTGCCAGCATATGGAAATTTCATTGGAAGGTTGCAGAATTTTCTTGGCAAACACAGTTATAATTATATTAAGTATGGAATGTTTGACGTCCTAGATCGAGTCGGCAATCTGTTTGTTGTGACGAAGAATAAGAATCTGTATCTGAAACACAAGTGGAAGAGACCCAAGCGCTTGCGTTGA 501 0.3673 MNNLSFIELEAEFYGLVPIFSHDWLRKIETKFQQNLELYMRSSWNKIVDFLKFDICESETSVAVGLLKDRINSFNEHFDDICNVQSTWFVFDEELRKHIVKSIENMLLPAYGNFIGRLQNFLGKHSYNYIKYGMFDVLDRVGNLFVVTKNKNLYLKHKWKRPKRLR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00004 166 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 145 IPR004140 GO:0000145|GO:0006887
Vium3162g00004 166 Pfam Exo70 exocyst complex subunit 1 133 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3162g00004 166 Gene3D Exocyst complex component Exo70 1 153 - -
Vium3162g00004 166 SUPERFAMILY Cullin repeat-like 1 145 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00004 Vium-Chr3162 23816 24316 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00004 1 145 EXO70 exocyst subunit family AT5G58430 40.816 3.39e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00004 - - vum:124833390 346.28