Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00003 ATGCTCATCAAAATTTGGAGGTGGCTACATCAGCCAAAGGTATGGAGATTTGTGTGTTTTGCTTCATCTATCGTTGGCCTTATCTGTTATGCTTTGAGCTCCTCTTTCAATCATTTACTTGGAAATTGGACCTGGTGGAAGTTACTTCTTTACATTATTTTCAGTTTTTTAATTTCCCTTTCCACCTTGTTTGGAAAGACATGGGAATACTCCAACTCTCGCTGTTTGGAAGCTCACACAGCATTTTCTGTTTTGCTTATCACTTCTGTATACTCCTTTTTCCTTGATAAAGATCTGAAACAGAAAGCAGATGCCTATAGTCTGCTTTCTTGTGTTGCTTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGTTAGGATTTGAGGTTGATCTCCTGTATTTTTTCTGTGGACTTCTGACCGTACAACTCATGAAAATAAAACCGTGGTTAGTCACTGTTGGAGGAGCTTTCAGTTATTCCCTCATCATTCTTCGTTCCAATTTGGATCCTCAACCAAGAAGTGGGTATCATGGACTTCAATACCAAGATCATGTAGTGGTTGAAATTGGTTCTCATTCACAACCACAAGGAATCAGTAATAGTGTTACTCAAGTGGATTCAACCCGAACCATTATGGCTAGTTCACAACCTCATCCTGTCATTGATATGGTCTGGCCTTCAAGAGGAACAAGGCGTAGTGCTTCTCTAGTAATTTCACCTCAAGAGGGTGGTTCTGGTGGTGGCCCTCCCGAAAACATTTATGGTACCGAGGAATGCTTCATGGGTTGTATAGAGGCTCTTAAGAAGGAGAATGGGAACGTTATCAGAGCAATTTCCATGCATGTAGACAAATACCTTAAAGCTAGTGTTCTTTATGAGGAGGAGATTTCAGTGGCAGAATTGCATGGCGACGACAACATGGTGGTGGATTCATTGTCGTCAGGAATGATCATCAAGCTTCGTGAAAGTGTAGAGAAGATGGTGTCAGATCGATTTGAGGAGGAATGCTTGCACGTTTACAGTAATTGTCGGAGGGAGTTTCTGAAAGAGAGCCTCTGGGCATTAGGGTTGCAGGATCAAGAGCTCAACGGGGAGGACATTAACAAGTCGGAGAAGAATGAGAGGCTGATAAAAGCTATGAATATAGCGGCGAGGATACTCTTTCCCAATGAAAAAAGACTCTTCAATCGTGTCTTTAGCCGCTCCATTCCCAATGGGGAGTTTAATTTCAGGGAACTTTGCACGGAATTGGCTACTAGTCTGCTGAACTCTGCCCTTGCCTTGGCAACTTGGAGCCATTTCATGCGCAACACATTGCAGGAGTTGATACAAGAGTTTGAATCATTTACAACACTCTTAAATATTGTAGTGCTCCTGATAAGGCAGAGATTGTGCATTTATGAAGCTTCGGAAAATGTATCACTCATTCCTGGTGGCGGGATTCATCCTATTACCCTTGAAGGGATGTACTATACTTATTCGGTTTACAGAAATAGGGAAATTAGGAAACTTAGCCAAGATTTAAAGGAGGGAAAGATTCCAGCATCTGTGTACATAGACAAAGTGAGAATTCTGTTAAAGAGTAGTTTGGACGATAAGTCAAAAAATGGTAATAAGCTTGAAGTGATGTACTACATTAAATCTCTACACCAAAGTAGGGAGAATAAACTTAGACTAGGTTTAGATGAAATGATTTCACCTGTGTGTAATTACAAGATGATAGAGCTTGTAGAGAGCAGTTTAGAAGCCAACTCCAAAAATTACAAAAACCCTTCTTTGCGTTATGTTTTCATCATGAACAACCGGCGATTCATTGAAGTAGAGACAAAACTGAATGGACTGGGACTTTCTTTTGGAGATGACTGGCTCCACAAAAACACAAGAAAGATCCAAGAAAACCTTGAGCTCTATCTAAGAAGCTCATGGAATAAGATTGTGGACCTTTTGAGGGTAGACATCAATCAACCAGAGTCTAGTGTTGTAGCCGAGTTGATGAAAGACAACCTTTATTGGTTCAACGAACACTTTGATGAGACATGCAACATTCAGTCTGCATGGTCTGTCTGTGATGAGGAGCTAAGGGAACAAGTAATAAAATCCATAGAAAACATGCTGTTGCCAGCTTATGGAAGTTTCCTTGGCACATTTGAGCAACTTGTTGGGAAGCATGCTTATAAGTACATTAGGTATGGAATGTTTGAGGTTCAAGATCGACTCAACAAATTGTTTCTTTTAAGGGAGTAG 2250 0.4076 MLIKIWRWLHQPKVWRFVCFASSIVGLICYALSSSFNHLLGNWTWWKLLLYIIFSFLISLSTLFGKTWEYSNSRCLEAHTAFSVLLITSVYSFFLDKDLKQKADAYSLLSCVAFAIMSLGLSRLSQLGFEVDLLYFFCGLLTVQLMKIKPWLVTVGGAFSYSLIILRSNLDPQPRSGYHGLQYQDHVVVEIGSHSQPQGISNSVTQVDSTRTIMASSQPHPVIDMVWPSRGTRRSASLVISPQEGGSGGGPPENIYGTEECFMGCIEALKKENGNVIRAISMHVDKYLKASVLYEEEISVAELHGDDNMVVDSLSSGMIIKLRESVEKMVSDRFEEECLHVYSNCRREFLKESLWALGLQDQELNGEDINKSEKNERLIKAMNIAARILFPNEKRLFNRVFSRSIPNGEFNFRELCTELATSLLNSALALATWSHFMRNTLQELIQEFESFTTLLNIVVLLIRQRLCIYEASENVSLIPGGGIHPITLEGMYYTYSVYRNREIRKLSQDLKEGKIPASVYIDKVRILLKSSLDDKSKNGNKLEVMYYIKSLHQSRENKLRLGLDEMISPVCNYKMIELVESSLEANSKNYKNPSLRYVFIMNNRRFIEVETKLNGLGLSFGDDWLHKNTRKIQENLELYLRSSWNKIVDLLRVDINQPESSVVAELMKDNLYWFNEHFDETCNIQSAWSVCDEELREQVIKSIENMLLPAYGSFLGTFEQLVGKHAYKYIRYGMFEVQDRLNKLFLLRE 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00003 749 PANTHER EXOCYST COMPLEX PROTEIN EXO70 285 745 IPR004140 GO:0000145|GO:0006887
Vium3162g00003 749 Gene3D Exocyst complex component Exo70 260 748 - -
Vium3162g00003 749 Pfam Exo70 exocyst complex subunit 465 742 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium3162g00003 749 SUPERFAMILY Cullin repeat-like 305 745 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00003 Vium-Chr3162 16392 18645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00003 297 745 EXO70 exocyst subunit family AT5G58430 36.082 3.46e-70 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00003 - - vra:106763388 1035.4