Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3162g00001 ATGTCATCTGCAATGCATCTTGTGATGCTAATGTATGGTTGCATTGGTGTTGTTGCTTCAAAGAATCTTGTCGAATCTTCAAAATTCTCATCCGTACTTGTTTTTGGAGATTCTACTGTTGATCCTGGTAATAACAATTATCTCCTAACTATTTCTAAGGCTAATCATTTTCCTTATGGCATAGATTTTCCAGGGCATGTAGCAACAGGGAGATTCAGCAACGGAAAATTGGTATCTGATTTTCTTGCCTCTGCCTTGAATATCAAAGACACTGTCCCTCCTTTTCTAAATCCAGACCTGAGTGACCAAGAACTTCTAACAGGAGTTTCTTTTGCCTCGGGAGAATCTGGTATTGATGAGCTCACTGCATCTCTCACAAATGTTTTATCGATGGACCAACAGCTTCAATATTTCAAAGCTTACACAATGAAGCTGAAGCAAATCGTAGGAGAAGATCAAGCCATGCAAAGACTTCGAGATGCTCTTGTTCTCATCTCTGTCGGTACTAACGATTTCATTTTGAATTTCCTTGACTTCCCCTCTCGAAGACTCATGTTCGTCACCATTGATGCTTACCAAGATTATTTGCTTGATAAGTTGGAGGTCATAATTAAGGAACTGTATGACGAAGGATGTAGGAACATTGGTGTGGCTGGGCTTCCTCCCCTTGGTTGTGTGCCTCTTCAAATGTCCCTAAAACTCAAAATTGATAGGCAATGTTTGGTGCATCAGAATGCCGACAGTGAGAAGTATAATCGGAAGTTGGCTCAGAGACTCTCCCTGTTACAAGCTACACTCCCTCAAAGCAAAATTGTATATGGAGATTTGTACCACCCCCTACTCAACCTTTATACTCATCCTCAGCATTATGGTATGGAGGTAACAAACAGAGGGTGTTGTGGATCAGGTTACTTGGAAGTGATTGAGATATGTAATGCATATACACCTCTATGCAGTAATCACTCAAAGTATGCATTTTGGGACAGTGTTCATTTAACCGAAGCATCTAACAGTTATCTTGCAGATCATCTTATAAGAGTAGCTTTGCCCTTATTCTTCAAATAG 1065 0.4028 MSSAMHLVMLMYGCIGVVASKNLVESSKFSSVLVFGDSTVDPGNNNYLLTISKANHFPYGIDFPGHVATGRFSNGKLVSDFLASALNIKDTVPPFLNPDLSDQELLTGVSFASGESGIDELTASLTNVLSMDQQLQYFKAYTMKLKQIVGEDQAMQRLRDALVLISVGTNDFILNFLDFPSRRLMFVTIDAYQDYLLDKLEVIIKELYDEGCRNIGVAGLPPLGCVPLQMSLKLKIDRQCLVHQNADSEKYNRKLAQRLSLLQATLPQSKIVYGDLYHPLLNLYTHPQHYGMEVTNRGCCGSGYLEVIEICNAYTPLCSNHSKYAFWDSVHLTEASNSYLADHLIRVALPLFFK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3162g00001 354 Pfam GDSL-like Lipase/Acylhydrolase 32 344 IPR001087 GO:0016788
Vium3162g00001 354 CDD SGNH_plant_lipase_like 31 345 IPR035669 -
Vium3162g00001 354 PANTHER GDSL ESTERASE/LIPASE EXL3 15 344 - -
Vium3162g00001 354 SUPERFAMILY SGNH hydrolase 152 347 - -
Vium3162g00001 354 Gene3D SGNH hydrolase 18 349 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3162g00001 Vium-Chr3162 1393 3466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3162g00001 1 346 Pollen Coat Proteome AT1G75910 34.483 1.15e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3162g00001 - - aprc:113874434 427.557