Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3159g00001 ATGGATAACTCTGACCTCTTTCAGTTCCTTTCAAACACCAATGATTCTTTCTTCCCTGAACCTGCATCATCAACCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTCTTACCCTTTGGAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAATAAGCTTCGCACTCTCCTTCCTTGTAATTCCAAGACCGACAAGGCTTCACTCTTGGCCAAGGTGGTCGAAAGGTTGAAGGAGTTGAAGCAACAGATGTCTGAAATAACCCAATGCGAAACGTTTCCTTCAGAGACCGACGAGATCTCCGTTCTGTCCACCAGCGGTGACGAGAGTGGTGGTGACGGACGAGTCACATTCAAGGCCTCGTTGTGCTGTGAGGACCGCTCCGGCCTCATCCCTGATCTCGTCGAAATTCTCAAGTCTCTGCACCTCACAACACTCAAAGCCGAAATCGCAACGCTGGGCGGAAGAACCCGCAACGTCCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGCACAGTTCGTTGAACTCTCTGCTGGAACACAACGGCACATCCAAACGACGCCGTGTCGCGGGACCAAAGTTCATCGCTTAA 678 0.5029 MDNSDLFQFLSNTNDSFFPEPASSTMQQSFSASFSSYPLEPFHAPPLQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLKELKQQMSEITQCETFPSETDEISVLSTSGDESGGDGRVTFKASLCCEDRSGLIPDLVEILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHGVESIHFLHSSLNSLLEHNGTSKRRRVAGPKFIA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3159g00001 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Vium3159g00001 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Vium3159g00001 225 PANTHER TRANSCRIPTION FACTOR BHLH30 27 219 IPR045847 GO:0003700|GO:0006355
Vium3159g00001 225 FunFam transcription factor bHLH30 48 111 - -
Vium3159g00001 225 Coils Coil 92 112 - -
Vium3159g00001 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 114 IPR036638 GO:0046983
Vium3159g00001 225 Gene3D - 48 114 IPR036638 GO:0046983
Vium3159g00001 225 SUPERFAMILY ACT-like 143 211 IPR045865 -
Vium3159g00001 225 CDD bHLH_AtAIG1_like 48 124 - -
Vium3159g00001 225 Coils Coil 52 72 - -
Vium3159g00001 225 SMART finulus 59 108 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3159g00001 Vium-Chr3159 4025 5369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3159g00001 48 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.639 7.73e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3159g00001 HLH 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3159g00001 - K22484 pvu:PHAVU_007G243000g 374.785