Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3158g00021 ATGATCTTTAGAACACTTGTCCTAGTTCTGGCTTTTATGGTGGCAAATTCAACAGCTCTTGCGGATCAACAGACATATATAGTTCACATTGACAAGACTAAGATCAGAGCCTCAATTCATTCTCAAGACAGCTCAAAGCCATGGTTTGAATCCATTATTGATTCTATTTCTGAAGCTTCAATGCAAGAAGACGGAGAAGAAGAGATTTTAGCCCCTCAACTCCTTTATGCCTATGAAACCAGCATGTTTGGTTTTGCTGCCCGTCTTTCCAAGAAACACCTCAAATACTTGAACCAAGTTGAGGGTTTCCTCTCAGCCATACCTGATGAACTATCAACACTCCACACAACGTACAGCCCACAGTTTCTTGGCCTAAGGAATAGAAGAGAACTTTGGACTGCTTCTAACTTGGCCAATGATGTGATCATTGGAGTTCTTGATTCAGGAATATGGCCTGAACACACCAGTTTCCGAGACTCAGGTTTGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAGAAAGGCACTAAGTTCTCTTCCTCGAATTGCAACAAGAAGCTTATTGGTGCGAGAGCCTATTTCAAGGGGTATGAAAAATTTTTTGGGAAAAAAATCAATGAAACAGTGGATTACCTTTCTCCAAGAGATTCCCAGGGGCATGGAACACACACTGCCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGGTAGAGGTACAGCAACTGGAATGAGGTATACTTCTAGAATTGCAGTTTATAAAGTATGCTGGTCTTCTGGTTGTACTAATTCTGATGTATTAGCTGCTATGGACCAAGCAGTTTCTGATGGGGTTGATGTGTTGTCACTCTCTTTAGGGAGTATTCCCAAACCTTTTTACAGTGATAGTATTGCCATAGCTTCATTTGGGGCAACCCAGAAAGGGGTTTTGGTTGCTTGCTCCGCAGGCAATTCAGGCCCTTTTCCATCAACGGTTGGAAATGGTGCTCCGTGGATCATGACAGTTGCTGCTAGCTCCACCGACCGAACCTTTCCAACAAAAGTAAAGCTTGGGAATGGACAAATTTTCAAAGGGTCATCCTTATATCAAGGTAAGAAAACAACCCAATTGCCCCTTGTGTATGGCAAATCAGCAGGTTCAACCAAGGAAGCGCAGTATTGCACTGGAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGAATAAATGGTAGAACTGAGAAAGGAGAGGAAGTGAAAATGGCAGGTGGGTCTGGAATGATTCTTCTCAACAATGAATATCAAGGAGAAGAGCTTTTTGCTGACCCTCATATTCTGCCAGCCACATCCTTGGGGGCTTCTGCAAGCAAGATTGTCAGAAGCTATAGTGAATCTATTAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACGAAGTTCAGGGACCCTGCACCAGTGATGGCAGCATTTTCTTCAAGAGGACCAAGTTTAGTGGGATCAGATGTGATTAAGCCTGATGTGACTGCACCTGGTGTGAACATTTTGGCTGCTTGGCCACCCAAAATCAGCCCAAGCTTTCTCAAGAGTGACAAAAGAAAAGTATCATTCAACATACTTTCAGGTACTTCAATGTCTTGTCCTCATGTCAGTGGCATAGCAGCACTGCTCAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCCATTAAATCTGCTCTCATGACTACTGCATACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCTTCTAATGACTCACCATTGGCTACTCCCTTTGTATTTGGTTCAGGCCATGTTAACCCTGTAAGTGCTTCTGATCCAGGGTTAGTGTATGATATCAGCACCAAAGACTACTTCAATTATCTTTGTAACATAAACTATACTTCTTCCCAGATTGCTTTATTATCAAGAAGTAACTTTGTATGTTCTAGAAAAGCATTTCTACAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTCTATTTGGCAGAAGTGCCTTTAATGCTAGTGTGACATACAGAAGGGTTGTCACAAATGTTGGAAAATCCCAAAGTTCTTATGCAGTTAAAGTGGAACAACCGAATGGAGTTTCAGTTAGTGTTGAACCAAGGAAATTGAAGTTTGAAAAACTGGGTCAGAAATTAAGCTATAATGTGACATTTTTGGCAACTGGAGGAGGTAAAGTTGGTGGTAGCTCATCATTTGGGTCACTGATTTGGGTATCTGACAGATATAAAGTTAGAAGTCCTATAGCAATAACCTGGCTATAG 2310 0.4225 MIFRTLVLVLAFMVANSTALADQQTYIVHIDKTKIRASIHSQDSSKPWFESIIDSISEASMQEDGEEEILAPQLLYAYETSMFGFAARLSKKHLKYLNQVEGFLSAIPDELSTLHTTYSPQFLGLRNRRELWTASNLANDVIIGVLDSGIWPEHTSFRDSGLSPVPSHWKGVCEKGTKFSSSNCNKKLIGARAYFKGYEKFFGKKINETVDYLSPRDSQGHGTHTASTAAGDMVKNANFLGQGRGTATGMRYTSRIAVYKVCWSSGCTNSDVLAAMDQAVSDGVDVLSLSLGSIPKPFYSDSIAIASFGATQKGVLVACSAGNSGPFPSTVGNGAPWIMTVAASSTDRTFPTKVKLGNGQIFKGSSLYQGKKTTQLPLVYGKSAGSTKEAQYCTGGSLDPKLVHGKIVACERGINGRTEKGEEVKMAGGSGMILLNNEYQGEELFADPHILPATSLGASASKIVRSYSESIKKPTASISFMGTKFRDPAPVMAAFSSRGPSLVGSDVIKPDVTAPGVNILAAWPPKISPSFLKSDKRKVSFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNDSPLATPFVFGSGHVNPVSASDPGLVYDISTKDYFNYLCNINYTSSQIALLSRSNFVCSRKAFLQAGDLNYPSFAVLFGRSAFNASVTYRRVVTNVGKSQSSYAVKVEQPNGVSVSVEPRKLKFEKLGQKLSYNVTFLATGGGKVGGSSSFGSLIWVSDRYKVRSPIAITWL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3158g00021 769 Pfam Subtilase family 139 587 IPR000209 GO:0006508|GO:0008236
Vium3158g00021 769 CDD Peptidases_S8_3 113 582 IPR034197 -
Vium3158g00021 769 Gene3D - 635 768 - -
Vium3158g00021 769 Gene3D - 347 485 - -
Vium3158g00021 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Vium3158g00021 769 FunFam subtilisin-like protease SBT1.5 347 485 - -
Vium3158g00021 769 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 143 154 IPR023827 -
Vium3158g00021 769 FunFam Subtilisin-like protease SBT1.5 635 769 - -
Vium3158g00021 769 CDD PA_subtilisin_like 354 478 - -
Vium3158g00021 769 Pfam Peptidase inhibitor I9 25 112 IPR010259 -
Vium3158g00021 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 26 765 IPR045051 -
Vium3158g00021 769 Pfam Fibronectin type-III domain 665 766 IPR041469 -
Vium3158g00021 769 FunFam Subtilisin-like protease SBT1.5 140 358 - -
Vium3158g00021 769 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Vium3158g00021 769 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Vium3158g00021 769 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Vium3158g00021 769 SUPERFAMILY Subtilisin-like 114 622 IPR036852 GO:0004252|GO:0006508
Vium3158g00021 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 12 115 IPR037045 -
Vium3158g00021 769 Gene3D Peptidase S8/S53 domain 140 631 IPR036852 GO:0004252|GO:0006508
Vium3158g00021 769 Pfam PA domain 376 460 IPR003137 -
Vium3158g00021 769 ProSiteProfiles Serine proteases, subtilase domain profile. 117 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3158g00021 Vium-Chr3158 100233 103364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3158g00021 23 768 Subtilisin-like Serine Gene Family AT1G01900 54.813 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3158g00021 - - gmx:100790006 1355.12