Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3158g00020 ATGAAGTGTCAATCCCTTTCTTCATTTTTTGCAGGCATCATGATCTTTAGAACACTTGTCCTAGTTCTGGCTTTTATGGTGGCAAATTCAACAGCTCTTGCGGATCAACAGACATATATAGTTCACATTGACAAGACTAAGATCAGAGCCTCAATTCATTCTCAAGACAGCTCAAAGCCATGGTTTGAATCCATTATTGATTCTATTTCTGAAGCTTCAATGCAAGAAGACGGAGAAGAAGAGATTTTAGCCCCTCAACTCCTTTATGCCTATGAAACCAGCATGTTTGGTTTTGCTGCCCGTCTTTCCAAGAAACACCTCAAATACTTGAACCAAGTTGAGGGTTTCCTCTCAGCCATACCTGATGAACTATCAACACTCCACACAACGTACAGCCCACAGTTTCTTGGCCTAAGGAATAGAAGAGAACTTTGGACTGCTTCTAACTTGGCCAATGATGTGATCATTGGAGTTCTTGATTCAGGAATATGGCCTGAACACACCAGTTTCCGAGACTCAGGTTTGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAGAAAGGCACTAAGTTCTCTTCCTCGAATTGCAACAAGAAGCTTATTGGTGCGAGAGCCTATTTCAAGGGGTATGAAAAATTTTTTGGGAAAAAAATCAATGAAACAGTGGATTACCTTTCTCCAAGAGATTCCCAGGGGCATGGAACACACACTGCCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGGTAGAGGTACAGCAACTGGAATGAGGTATACTTCTAGAATTGCAGTTTATAAAGTATGCTGGTCTTCTGGTTGTACTAATTCTGATGTATTAGCTGCTATGGACCAAGCAGTTTCTGATGGGGTTGATGTGTTGTCACTCTCTTTAGGGAGTATTCCCAAACCTTTTTACAGTGATAGTATTGCCATAGCTTCATTTGGGGCAACCCAGAAAGGGGTTTTGGTTGCTTGCTCCGCAGGCAATTCAGGCCCTTTTCCATCAACGGTTGGAAATGGTGCTCCGTGGATCATGACAGTTGCTGCTAGCTCCACCGACCGAACCTTTCCAACAAAAGTAAAGCTTGGGAATGGACAAATTTTCAAAGGGTCATCCTTATATCAAGGTAAGAAAACAACCCAATTGCCCCTTGTGTATGGCAAATCAGCAGGTTCAACCAAGGAAGCGCAGTATTGCACTGGAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGAATAAATGGTAGAACTGAGAAAGGAGAGGAAGTGAAAATGGCAGGTGGGTCTGGAATGATTCTTCTCAACAATGAATATCAAGGAGAAGAGCTTTTTGCTGACCCTCATATTCTGCCAGCCACATCCTTGGGGGCTTCTGCAAGCAAGATTGTCAGAAGCTATAGTGAATCTATTAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACGAAGTTCAGGGACCCTGCACCAGTGATGGCAGCATTTTCTTCAAGAGGACCAAGTTTAGTGGGATCAGATGTGATTAAGCCTGATGTGACTGCACCTGGTGTGAACATTTTGGCTGCTTGGCCACCCAAAATCAGCCCAAGCTTTCTCAAGAGTGACAAAAGAAAAGTATCATTCAACATACTTTCAGGTACTTCAATGTCTTGTCCTCATGTCAGTGGCATAGCAGCACTGCTCAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCCATTAAATCTGCTCTCATGACTACTGCATACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCTTCTAATGACTCACCATTGGCTACTCCCTTTGTATTTGGTTCAGGCCATGTTAACCCTGTAAGTGCTTCTGATCCAGGGTTAGTGTATGATATCAGCACCAAAGACTACTTCAATTATCTTTGTAACATAAACTATACTTCTTCCCAGATTGCTTTATTATCAAGAAGTAACTTTGTATGTTCTAGAAAAGCATTTCTACAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTCTATTTGGCAGAAGTGCCTTTAATGCTAGTGTGACATACAGAAGGGTTGTCACAAATGTTGGAAAATCCCAAAGTTCTTATGCAGTTAAAGTGGAACAACCGAATGGAGTTTCAGTTAGTGTTGAACCAAGGAAATTGAAGTTTGAAAAACTGGGTCAGAAATTAAGCTATAATGTGACATTTTTGGCAACTGGAGGAGGTAAAGTTGGTGGTAGCTCATCATTTGGGTCACTGATTTGGGTATCTGACAGATATAAAGTTAGAAGTCCTATAGCAATAACCTGGCTATAG 2349 0.4219 MKCQSLSSFFAGIMIFRTLVLVLAFMVANSTALADQQTYIVHIDKTKIRASIHSQDSSKPWFESIIDSISEASMQEDGEEEILAPQLLYAYETSMFGFAARLSKKHLKYLNQVEGFLSAIPDELSTLHTTYSPQFLGLRNRRELWTASNLANDVIIGVLDSGIWPEHTSFRDSGLSPVPSHWKGVCEKGTKFSSSNCNKKLIGARAYFKGYEKFFGKKINETVDYLSPRDSQGHGTHTASTAAGDMVKNANFLGQGRGTATGMRYTSRIAVYKVCWSSGCTNSDVLAAMDQAVSDGVDVLSLSLGSIPKPFYSDSIAIASFGATQKGVLVACSAGNSGPFPSTVGNGAPWIMTVAASSTDRTFPTKVKLGNGQIFKGSSLYQGKKTTQLPLVYGKSAGSTKEAQYCTGGSLDPKLVHGKIVACERGINGRTEKGEEVKMAGGSGMILLNNEYQGEELFADPHILPATSLGASASKIVRSYSESIKKPTASISFMGTKFRDPAPVMAAFSSRGPSLVGSDVIKPDVTAPGVNILAAWPPKISPSFLKSDKRKVSFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNDSPLATPFVFGSGHVNPVSASDPGLVYDISTKDYFNYLCNINYTSSQIALLSRSNFVCSRKAFLQAGDLNYPSFAVLFGRSAFNASVTYRRVVTNVGKSQSSYAVKVEQPNGVSVSVEPRKLKFEKLGQKLSYNVTFLATGGGKVGGSSSFGSLIWVSDRYKVRSPIAITWL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3158g00020 782 CDD PA_subtilisin_like 367 491 - -
Vium3158g00020 782 Pfam PA domain 389 473 IPR003137 -
Vium3158g00020 782 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 25 128 IPR037045 -
Vium3158g00020 782 FunFam Subtilisin-like protease SBT1.5 648 782 - -
Vium3158g00020 782 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 156 167 IPR023827 -
Vium3158g00020 782 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 39 778 IPR045051 -
Vium3158g00020 782 Gene3D - 648 781 - -
Vium3158g00020 782 FunFam Subtilisin-like protease SBT1.5 153 371 - -
Vium3158g00020 782 Pfam Fibronectin type-III domain 678 779 IPR041469 -
Vium3158g00020 782 ProSitePatterns Serine proteases, subtilase family, serine active site. 559 569 IPR023828 -
Vium3158g00020 782 Gene3D Peptidase S8/S53 domain 153 644 IPR036852 GO:0004252|GO:0006508
Vium3158g00020 782 Gene3D - 360 498 - -
Vium3158g00020 782 ProSiteProfiles Serine proteases, subtilase domain profile. 130 631 - -
Vium3158g00020 782 PRINTS Subtilisin serine protease family (S8) signature 151 170 IPR015500 -
Vium3158g00020 782 PRINTS Subtilisin serine protease family (S8) signature 230 243 IPR015500 -
Vium3158g00020 782 PRINTS Subtilisin serine protease family (S8) signature 558 574 IPR015500 -
Vium3158g00020 782 SUPERFAMILY Subtilisin-like 127 635 IPR036852 GO:0004252|GO:0006508
Vium3158g00020 782 FunFam subtilisin-like protease SBT1.5 360 498 - -
Vium3158g00020 782 Pfam Peptidase inhibitor I9 38 125 IPR010259 -
Vium3158g00020 782 CDD Peptidases_S8_3 126 595 IPR034197 -
Vium3158g00020 782 Pfam Subtilase family 152 600 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3158g00020 Vium-Chr3158 100233 103364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3158g00020 36 781 Subtilisin-like Serine Gene Family AT1G01900 54.813 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3158g00020 - - gmx:100790006 1355.5