Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3158g00009 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCCACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATTGGAGGTGGTGGTTGCGGTGGTGGCGGCTACCAGGGCTCAATTAGGCCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTGAAATGTCCGAGGTGTGAATCTGCTAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTTTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAGAGAAACAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCAACACAAACTCAATTTCCATTCTTAACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCGCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGGTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACATGTTGTGA 1092 0.4734 MVFPSLPIYLDPPNWSQQPNQPAGIATQNPHIPPPLQPPPSSVTAAIGGGGCGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGTITTTPLVGRNSSDVEFQIGTGSASSLGNSGGAMLSNGLGEQWRLNNLQQVQQQFAFLSTNLEPQIGLFQFGGGENNNAEPPSYAKEGGRFNIRSKIDSISSLSGLMPQVNTIKMEENQGLNLPKNLLMGNDALWNGSGNAWSEVPCFTPSNNHML 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3158g00009 363 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Vium3158g00009 363 Pfam Dof domain, zinc finger 80 136 IPR003851 GO:0003677|GO:0006355
Vium3158g00009 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 244 IPR045174 GO:0003700|GO:0006355
Vium3158g00009 363 MobiDBLite consensus disorder prediction 126 170 - -
Vium3158g00009 363 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Vium3158g00009 363 MobiDBLite consensus disorder prediction 144 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3158g00009 Vium-Chr3158 30774 32816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3158g00009 1 257 C2C2-Dof Transcription Factor Family AT2G37590 41.199 1.46e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium3158g00009 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3158g00009 - - vun:114185583 577.4