Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3153g00020 ATGGCCGAGGCTTTGCTCGGACTTGTAATTCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCTACGTTTTGGGGTGTTCACCAACAGACTCAAAAGCTTTCCAGCAATCTCACTGCAATACGTGCTGTACTCAGAGATGCTGACAGAAAACAAATAAAAAGTCATGCTGTGAAAGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTAGATGAATGTTCTATTCACTCCACAAAAGTGAATTTTGATGATCGACATACTTCATGCCTATCCCGTCTTCATCCTAAGGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCTCCCAAAGATTTCATGACATTCACGAAGAAAGGAGCATGTTTAATTTAGAACCCGGTGTCACAGAGGTCCAAACAATCCATGATAATTGGCGCCAAACTAGCTCTGACATTACAGAACATATAGTGTATGGTAGAGGCCAGGATCGAGAGCAAATTTTGAAGTTTCTTTTGGAAGATGTGAGTGACAATGAAGACCTCTCTATCTATCCCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTATGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATCATAGAATGCATCACTGGACAAAATCCCCATCTCAATAGCTTAGAAGCAATGCGGAGAAAGGTTGAAGAAGTGTTGCATGGGATGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGAAGCAGTTGAAGGGGAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACTACTCGACTCGAGGAAGTTGCTTCCACCATGCAAACGCATCCTGCCTACCATTTGAAAGAATTATCAGGAGATGATTGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAATGGAAGAACTGGTGTCAATTGGCAAAGAGATAGTGAGAAAATGCGTTGGTTCACCGCTTGCAATCAAAACATTGGGAAGGCTATTACGCGATGAAAGTGACGTAAAACAATGGCAGAATGTAAAGGAAAGTGAGATTTGGGATATACGGGAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTCTATCATGCGTGCTTTGAAATTAAGCTATTTTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTTCCCAAAGATTTTGAAATAGACAAGGAAGAACTTATTCATCTCTGGATGGCTAATGGATTTATTAAATGTGAAGGAAATGTAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAAGAAATTATACAGTAGATCATTTTTTCAAGAAGCTAAGTATGATGAATTTGGTATGATCACTACTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAGGAATGTGTGGTTATTATGAAAGGAAGATTGACTCCATTGTCAACTACAGTTCATTATTCAAGCTTGTTCAATTCTGGTGTGTCGTCTGTTGATATGACTGGTCAAAGATTCATGACTGCTTTGAAGAAGGTTGAATCCCTCCGAACTTTTCTTGATTATGGCGGTATAGGCCTGATGCCAACAAATCATTGTGTCCGAGCATTGCAAATAAGCTCTTCTTTTTTGTCCCCACTCAAGGATTTAACACTTTTGAGATACTTGAATTTGAGATGTAGTAGGAGTTCGGAAGAAAACTTAAATAACTCAATTTGTCAGTTGCTGAAATTGCAAATATTAAAATTGTTTCATTTGCCCAAACTTCATGGGTTGCCTAAGGACTTGACACAATTACAGGATCTGAGGCATATTGTGATTGATGGCATGGATATAACACAAGAGATGTCTCCAAATATTGGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGTTTAAATTTGGGAGGCACGCTAAGAATAGGAGGCCTTGAGAACGTTCCGAATGAAAGGGATGCTAAACAAGCAAATTTGATTGGTAAGAAGGACTTGAATATCCTGCGCTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATTTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAAATGAATGGATATAAGGGAAGGCAGATATCGAGTTGGATGAGAAATAGAGCAGTTTTGAAAGACTTGGTGGATGTTACACTCTCCAACTGTGACAACTGTGAGGATCTTCCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAAGCGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGATACGTATGATGGTGTGGAGGAAAAGGCATTTCCATCGTTGGAGAACTTGGGTGTGAAGAATTTACGAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTCCCTCGTCTTTCCCAATTAACAATTGAAGGTGTTTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGGAACTTAGTGTTGAAAGGATTGGCGAAGCGGCTTCCTTCATGGAAGTTGTGGGGAATATGGCTTTTCTAAAGACCTTGAGCATTGAAATTATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTGCAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGACCATTCATTACTGTAAGAAATTAAAGTCCTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTGTGAGTTTGGCGATCAGTAATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGTCAACTATCTGCCCTGCGGAAGGTTTCAATCAATTATTGCTGCACATTACCAAATGGCTTACAACGTATCCCCTCCTTACGAGTTTTATATATAGACGAATGCACGTGTACTTCATTGCCGGACTGGCTGGGAGACATGACTACCCTTGAAGAATTAACCATTTGGTATTGTAAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCGCCAACTTGTCTTATTTAACTATACACTATTGTCCTCATCTGAAGAAGCGATGCAATAGGGAAACAGGAGAGGATTGGCAATACATAAAGCACATTCAGCGATTGGAACTACTTTTCACGAGGAAACAGACGTTTTGTGGTAAATTCAATAGCATTTTGCGCAGTGTACATATTAAATAA 3354 0.4058 MAEALLGLVIQNLQSFGQDQLATFWGVHQQTQKLSSNLTAIRAVLRDADRKQIKSHAVKDWLQKLTDAAYVLDDILDECSIHSTKVNFDDRHTSCLSRLHPKDILFRFNIGKRMKDISQRFHDIHEERSMFNLEPGVTEVQTIHDNWRQTSSDITEHIVYGRGQDREQILKFLLEDVSDNEDLSIYPIVGMGGLGKTTLAKQVFNDHRVCKHYDLTIWVCVSDDFNTMTILQSIIECITGQNPHLNSLEAMRRKVEEVLHGMRYLLVLDDVWNEDPEKWKQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYHLKELSGDDCWSLFKHHAFGPNREEMEELVSIGKEIVRKCVGSPLAIKTLGRLLRDESDVKQWQNVKESEIWDIREESSSATGEENSIMRALKLSYFNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIKCEGNVEVEDVGNKVWKKLYSRSFFQEAKYDEFGMITTFKMHDLFHDLAQSIMGEECVVIMKGRLTPLSTTVHYSSLFNSGVSSVDMTGQRFMTALKKVESLRTFLDYGGIGLMPTNHCVRALQISSSFLSPLKDLTLLRYLNLRCSRSSEENLNNSICQLLKLQILKLFHLPKLHGLPKDLTQLQDLRHIVIDGMDITQEMSPNIGKLRHLRTLSIFVVGSKPGCGLAELHSLNLGGTLRIGGLENVPNERDAKQANLIGKKDLNILRLSWDGNANPKGSNLSVERVLEALEPPSTLKSFEMNGYKGRQISSWMRNRAVLKDLVDVTLSNCDNCEDLPPLGKLPHLKRLSVSGMKNVKWIDGDTYDGVEEKAFPSLENLGVKNLRNLERLLRDEGVEMLPRLSQLTIEGVLNFKVPRLPCVEELSVERIGEAASFMEVVGNMAFLKTLSIEIIKGVVVLPDEFRRLGALQELYIAEWYDVEYFPEHVLEGLTSLRTLTIHYCKKLKSLSEGVRHLACLVSLAISNCPELVALPSNMSQLSALRKVSINYCCTLPNGLQRIPSLRVLYIDECTCTSLPDWLGDMTTLEELTIWYCKELRSLPSSIQRLANLSYLTIHYCPHLKKRCNRETGEDWQYIKHIQRLELLFTRKQTFCGKFNSILRSVHIK 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3153g00020 1117 Gene3D Ribonuclease Inhibitor 543 859 IPR032675 -
Vium3153g00020 1117 Pfam Rx N-terminal domain 6 87 IPR041118 -
Vium3153g00020 1117 Gene3D - 320 416 IPR042197 -
Vium3153g00020 1117 PRINTS Disease resistance protein signature 356 370 - -
Vium3153g00020 1117 PRINTS Disease resistance protein signature 940 956 - -
Vium3153g00020 1117 PRINTS Disease resistance protein signature 185 200 - -
Vium3153g00020 1117 PRINTS Disease resistance protein signature 258 272 - -
Vium3153g00020 1117 Pfam NB-ARC domain 165 412 IPR002182 GO:0043531
Vium3153g00020 1117 PANTHER DISEASE RESISTANCE PROTEIN RP 42 838 IPR044974 GO:0006952
Vium3153g00020 1117 Gene3D - 6 120 - -
Vium3153g00020 1117 FunFam Probable disease resistance protein At1g61300 141 315 - -
Vium3153g00020 1117 Gene3D - 418 501 IPR036388 -
Vium3153g00020 1117 CDD RX-CC_like 2 124 IPR038005 -
Vium3153g00020 1117 Gene3D - 145 315 IPR027417 -
Vium3153g00020 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 426 IPR027417 -
Vium3153g00020 1117 SUPERFAMILY L domain-like 490 860 - -
Vium3153g00020 1117 FunFam Probable disease resistance protein At1g63360 412 501 - -
Vium3153g00020 1117 Gene3D Ribonuclease Inhibitor 861 1114 IPR032675 -
Vium3153g00020 1117 SUPERFAMILY RNI-like 836 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3153g00020 Vium-Chr3153 132715 136517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3153g00020 939 1074 WRKY Transcription Factor Family AT4G12020 28.676 8.26e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3153g00020 - - vum:124833357 1934.07