Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3153g00019 ATGGCAGAAGCTTTGCTAGGAATTGTGCTTGACAATTTGGGATCTTTTCTTCAAGACCAACTTGCAACTTATTGGGGTGTTGATCAACATGCTCATAAACTTTCCAGCAACCTCACCACAATCCGTGCTGTCCTCAGAGATGCTGAGAGAAAGCAAATAACAAGTCATGCTGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATACGTGCTTGATGATATCTTGGATGAGTGTTCAGTTCAATCCAAAAAACTGCACTCTGTTGATGGTCATACTTCACGCCTATCCCATCTCCATCCTAAGGACATTCTCTTTCGCTTTCGTATTGGGAAGAGGATGAAAGACATCACTCAAAGGTTTCATGACATTCATGAAGAAAGGCTCACATTTGAATTGCGTGTGGGCGTCACGGAGAAGCAAGCAGTGAATGATGATGATAATGATTGGCGTCAAACTAGCTCAGTGATTACCTAACCAATATTCTGTGGCAGAGACAAGGATCGAGAGAAAATTGTAAAGTTTCTGTTGGAAGATGCTAGTAACAGTGAAGAACTCAGCATCTATCCCATAGTTGGTATGGGTGGACTTGGCAAAACAACTCTTGCCAAGCGGGTCTTCAATGATCACGAGATAAGTAAACATTTTGACTTGAGAATTTGGATCTGCGTTTCGGGTGATTTCAATGTGAAGAGAATACTGCAATCCATTATAGAATGTAGCATTGGTCAAAATCCCAACCTGGGTGATTTAGAAGCAAGGCGAAAAAGGGTTGAAGAAGCATTGCAAAGAAAGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCGAGAGAAGTGGAAGGAGTTGAAGGGGATGTTGGAGTGGGCGAAGGGAGCAAAAGGAGCTACGATTTTGGTCACCACTCGACTTCAGGAAGTTGCCTCCATCATGGGGACGCATCCTGCTTACAGTTTGACAGCATTGTCAGAAGACGACAGTTGGTCATTGTTCAAACACCATGCATTTGAACTAAACAGAGAAAAAAGGGAAGAGCTTGTGGCAATTGGCAAAGAAATAGTAAGGAAATGCGTTGGTTCGCCACTTGCAATCAAAACACTGGGAAGCTGTTTGCGTGATGTAAGTGAAATAAAGCAGTGGCAGAATATAAAGGAAAGTGAGATTTGGAATATACAGGAGGTAAGTAGTTCTCTGATAAGTGACGAAAATTCTATCATGCGTGCCTTGAAATTAAGCTATTTTAATTTGGAGTGGTCATTGCGGAGATGCTTTTCTTTCTGTGCAATTTTCCCTAAAGATTTTGAAATTGATAAAGAAGAACTCATTCATCTTTGGATGGCTAATGGATTTATTAAACAGGAAGGGAATGTAGAGGTGGAGGATGTTGGTAATAAAGTGTGGAAAAGATTATACGATAGATCATTCTTTCAAGAAGCAAAGGCCAATAGGATTGGTATGATTAAAACTTTCAAGATGCACGATCTCTTCCATGATCTTGCTCAGTCTATTATGGGCGAAGAATGTGTGATTTACGGGGAAAGAAAGTTGACTCGATTGCCAAATAGAGTTCACTATTTACGATTGTTAAATTCTAATTATTTTGTCGATATGGCTGCCTTCAAGAAAGTTGAATCATTTCGAACTGTAATTGATTTTGGTCAAGGATTGCATTGTGTAAATATTGGTTTGTTGCCATCAAATCATTGTCTCCGAGCATTACACATAAGATCTTCTCTTTTCTCCCCACTGAATAATTTATCACATTTGAGATATTTGAGTTTGGACATGTGTTCAGTATTGCATAATTCTATTTGTGGGTTGCAGAAATTGCAAATACTGAAACTCGAATATTGTGGAGGGTTGCATAATTTTTTTCCAGAAAACATGACACAATTACAGGATCTTAGGCATCTTGTGATTAATAAATGTCCTTCAATAGCAGAGATGCCTCGGAATATTGGAAAGTTAAGGCATCTAAGAACATTGAACACCTTCGTCGTGGGTTCAAAACTGGAGTATGGGTTGGCAGAGTTACATGGCTTAAGTCTGGTTGGCAAACTGCATATGAGAGGCCTTGAGAATGTGAGCAATGAATGGGAGGCTAAAGAAGCAAATTTGATGAGCAAGAAGGAGTTGAATCGCCTATACTTATCATGGGGTGGTAGTGCTAACTCACAAGGTAGTAATGTTAGTGTGGAGAGAGTCCTGGAAGACCTGGAACCTCCCTCAACTCTGAAGAGTTTTGGGATGCAAGGATATCAGGGAAGAAAGTTATCGAGTTGGATGAGAAGTGTTGTAGTTCTTAAAGACTTGGTGGAAGTTATACTCGTGGACTGTAAGAACTGTGAGGAGCTTCCTCCACTTGGAAAACTACCACACTTGAAAAAGATAGACGTGCGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGTCGTATGAAGAAGGTGTGGAGGAGAAGGCATTTCCATCGTTGGAGAAATTGAGTGTGAAGAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAAATGGTCCCTCGTCTTTCCCAATTAAGAATTGATGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGACAGTTCATGCTAGAGGAATTGAGGCAGTGACTTCTTTCATGGAAGGGGTTGCGGAGAATATGACATGTCTGAAGAGCTTGCAAATTGCATTCATGAAAGATTTGAAGGTACTGCCCGACAAACTGAGCAGTCTGAGTGCACTACAGAAACTAGAGATATTGGGATGTGAGGAGTTGAGGTCACTGCCAAGTAGCTTTCAACGCCTCACCAACTTGTCTAAATTAAGTATTTTCAATTGTCCTTGGCTGATGGAGAGATACAGAAGGGAAACAGGAAATGATTCGCAACTCATAGCTCACATTCCAAATATAGAATTGGAATACATCTTCGCATTCGAAGAGACAGAGGCTTTACCATTTAGTGTAGAAAGTTGGCTGCGATCATCTTGCTCATGGAACTGCTTCAAGGCTACAAGACCGCCTGCCAAAATAGAAAAATTTTATTTTGACTACATGGATGAAATGGCTGAGCCTTTGCTCGGAATTGTAATTCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCTACGTTTTGGGGTGTTCACCAACACACTCAAAAGCTTTCCAGCAATCTCACTGCAATCCGTGCTGTCCTCAGAGATGCTGAGAGAAAACAAATCACAAGTCATGCTGTCAAAGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTAGATGAATGTTCTATTCACTCCACAAAAGTGAATTTTGGTGATGGAGATACTTCATGCCTATCCCGTCTCCACCCTAAGGACATTTTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCACCCAAAGATTTCATGACATTCACGAAGAAAGGAGCATGTTTAATTTAGTACCCGGTGTCACAGAGGTCCAAACAATCCATGATAATTGGCGCCAAACTAGCTCTGACATTACAGAGCCTATAGTCTACGGCAGAGACCAGGATCGAGAGCAAATTTTGAAGTTTCTTTTGGAAGATGTTAGAGACAGTGAAGACCTCTCCGTCTATCCCATAGTGGGCATGGGTGGACTTGGCAAAACAACACTTGCCAAGCAGGTCTTCAATGATAACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCAAGACAATACTACAATCCATCATAGAATGCATCACCGGACAAAATTTCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGTGTTGCATGGGATGAGGTATTTACTTGTTCTTGATGATGTGTGGAATCAAGACCCAGAGAAATGGGAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACCACTCGACTCAAGGAAGTTGCTTCCACCATGCAGACGCATCCTGCTTACGATTTGAAAGAATTGTCAGGAGATGATAGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAACGGAAGAACTCGTGTCAATTGGCAAAGAGATAATGACAAAATGCGTTGGTTCACCGCTTGCAATCAAAACATTGGGAAGCCTATTACGTGATGAAAGTGACGTAAAACAATGGCAGAATGTAAAGGAAAGTGAGATTTGGGATATACGGGAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTCTATCATGCGTGCTTTGAAATTAAGCTATTTTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTTCCCAAAGATTTTGAAATAGACAAGGAAGAACTTATTCATCTCTGGATGGCTAATGGATTTATTAAATGTGAAGGAAATGTAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAAAAAATTATACAGTAGATCATTTTTTCAAGAAGCTAAGTATGATGAATTTGGTATGATCACAACTTTCAAGATCCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAGGAATGTGTGGTTATTGTGAAAGGAAGATTGACTCCATTGCCAACTAGAGTTCACTATTCAAGCTTGTTCAATTCTGGTGTGTCTGATGATATGACTGCTTTCAAGCAAAGATTGACGACTGATTTGAAGAAGGTTGAATCCCTGCAGACTTTTCTTGATATTGGTGGTATTGGCCCGGTGCCATCAAATCATTGTCTCCGAGCATTGCAAACAAGCTCTTCATTGTTGTCCCCACTCAAGGATTTAACACTTTTGAGATACTTGAGTTTGAGATTTTGTAGTTGTTCGGAAGAAAGCTTAAATAGCTCAATTTGTCAGTTGCCAAAATTGCAAATACTGAAACTGTTTCATTGTCAAGAACTTCATGGGTTGCCTAAGGACTTGACACGATTACAGGATCTGAGGCATATTGTGATTGATGACATGGATACAATACAAGAGATGCCTCCGAATATTGGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGCTTAAATCTAGGAGGCACGCTGAGCATCAGAGGCCTTGAAAACATCTCCGATGAATGGGATGCTAAACAAACAAATTTGATTGGTAAGAAGGAATTGAATATCCTGCACTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCACCTTCAACTCTGAAGAGTTTTGAAATGAATGGTTATCAGGGAAGGCATTTATCGAGTTGGATGAGAAATAATGCAGTTTTGAGAGACTTGGTGAAAGTTACACTCTCCGACTGTGACAACTGTGAGGAGCTTTCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAAACGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGACGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGGAACTGATTGTTGATAATTTACCAAATATGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTCCCTCGTCTTTCCCAATTAAGAATTGAAGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGGAACTTAGTGTTGAAAGGATTGGCGAAGCGGCTTCCTTCATGGAAGTTGTGGGGAATATGGCTTTTCTAAAGACCTTGAGCATTGAAATTATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTGCAGAATGGTATGATGTAGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTAATTACTGTAAGAAATTAAAATCCTTGTCCGAAGGTGTGCGACATTTGGCTCGTCTTGAGAGTTTGATGATCAGCGATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGTCAACTAACTGCCCTGCGGGAGGTTTCAATCAATTATTGCTGCACATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGAGTTTTATATATATACGAATGCACGTGTACTTCATTGCCGGACTGGCTAGGAGACATGACTACTCTTGAACAATTAAGAATTGCATACTGTAAGGAGTTGAGGTCACTGCCGAGTAGCATTAAACGGCTCACCAACTTGTCTTATTTAAGCATATGCAGATGTCCTCATCTGAAGATGGAAACAGGAGAGGATTGGCAATACATAAAGCACATTCCAAAATTAGAACTATTGCCATGA 6366 0.4094 MAEALLGIVLDNLGSFLQDQLATYWGVDQHAHKLSSNLTTIRAVLRDAERKQITSHAVKDWLQKLTDAAYVLDDILDECSVQSKKLHSVDGHTSRLSHLHPKDILFRFRIGKRMKDITQRFHDIHEERLTFELRVGVTEKQAVNDDDNDWRQTSSVITXPIFCGRDKDREKIVKFLLEDASNSEELSIYPIVGMGGLGKTTLAKRVFNDHEISKHFDLRIWICVSGDFNVKRILQSIIECSIGQNPNLGDLEARRKRVEEALQRKRYLLVLDDVWNEDREKWKELKGMLEWAKGAKGATILVTTRLQEVASIMGTHPAYSLTALSEDDSWSLFKHHAFELNREKREELVAIGKEIVRKCVGSPLAIKTLGSCLRDVSEIKQWQNIKESEIWNIQEVSSSLISDENSIMRALKLSYFNLEWSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIKQEGNVEVEDVGNKVWKRLYDRSFFQEAKANRIGMIKTFKMHDLFHDLAQSIMGEECVIYGERKLTRLPNRVHYLRLLNSNYFVDMAAFKKVESFRTVIDFGQGLHCVNIGLLPSNHCLRALHIRSSLFSPLNNLSHLRYLSLDMCSVLHNSICGLQKLQILKLEYCGGLHNFFPENMTQLQDLRHLVINKCPSIAEMPRNIGKLRHLRTLNTFVVGSKLEYGLAELHGLSLVGKLHMRGLENVSNEWEAKEANLMSKKELNRLYLSWGGSANSQGSNVSVERVLEDLEPPSTLKSFGMQGYQGRKLSSWMRSVVVLKDLVEVILVDCKNCEELPPLGKLPHLKKIDVRGMKNVKWIDGESYEEGVEEKAFPSLEKLSVKNLPNLERLLRDEGVEMVPRLSQLRIDGVLNFKVPRLPCVETVHARGIEAVTSFMEGVAENMTCLKSLQIAFMKDLKVLPDKLSSLSALQKLEILGCEELRSLPSSFQRLTNLSKLSIFNCPWLMERYRRETGNDSQLIAHIPNIELEYIFAFEETEALPFSVESWLRSSCSWNCFKATRPPAKIEKFYFDYMDEMAEPLLGIVIQNLQSFGQDQLATFWGVHQHTQKLSSNLTAIRAVLRDAERKQITSHAVKDWLQKLTDAAYVLDDILDECSIHSTKVNFGDGDTSCLSRLHPKDIFFRFNIGKRMKDITQRFHDIHEERSMFNLVPGVTEVQTIHDNWRQTSSDITEPIVYGRDQDREQILKFLLEDVRDSEDLSVYPIVGMGGLGKTTLAKQVFNDNRVCKHFDLTIWVCVSDDFNTKTILQSIIECITGQNFNLNSLEAMRKKVEEVLHGMRYLLVLDDVWNQDPEKWEQLKGKLQCARAAKGATILVTTRLKEVASTMQTHPAYDLKELSGDDSWSLFKHHAFGPNREETEELVSIGKEIMTKCVGSPLAIKTLGSLLRDESDVKQWQNVKESEIWDIREESSSATGEENSIMRALKLSYFNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIKCEGNVEVEDVGNKVWKKLYSRSFFQEAKYDEFGMITTFKIHDLFHDLAQSIMGEECVVIVKGRLTPLPTRVHYSSLFNSGVSDDMTAFKQRLTTDLKKVESLQTFLDIGGIGPVPSNHCLRALQTSSSLLSPLKDLTLLRYLSLRFCSCSEESLNSSICQLPKLQILKLFHCQELHGLPKDLTRLQDLRHIVIDDMDTIQEMPPNIGKLRHLRTLSIFVVGSKPGCGLAELHSLNLGGTLSIRGLENISDEWDAKQTNLIGKKELNILHLSWDGNANPKGSNVSVERVLEALEPPSTLKSFEMNGYQGRHLSSWMRNNAVLRDLVKVTLSDCDNCEELSPLGKLPHLKRLNVSGMKNVKWIDGETYDGVEEKAFPSLEELIVDNLPNMERLLRDEGVEMLPRLSQLRIEGVLNFKVPRLPCVEELSVERIGEAASFMEVVGNMAFLKTLSIEIIKGVVVLPDEFRRLGALQELYIAEWYDVEYFPEHVLEGLTSLRTLSINYCKKLKSLSEGVRHLARLESLMISDCPELVALPSNMSQLTALREVSINYCCTLPDGLQRVPSLRVLYIYECTCTSLPDWLGDMTTLEQLRIAYCKELRSLPSSIKRLTNLSYLSICRCPHLKMETGEDWQYIKHIPKLELLP 2121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3153g00019 2121 PRINTS Disease resistance protein signature 261 275 - -
Vium3153g00019 2121 PRINTS Disease resistance protein signature 188 203 - -
Vium3153g00019 2121 PRINTS Disease resistance protein signature 359 373 - -
Vium3153g00019 2121 PRINTS Disease resistance protein signature 586 602 - -
Vium3153g00019 2121 FunFam Probable disease resistance protein At1g61300 145 318 - -
Vium3153g00019 2121 FunFam Probable disease resistance protein At1g61300 1168 1342 - -
Vium3153g00019 2121 Gene3D - 1347 1443 IPR042197 -
Vium3153g00019 2121 Gene3D - 323 419 IPR042197 -
Vium3153g00019 2121 Gene3D - 1033 1144 - -
Vium3153g00019 2121 Gene3D - 6 118 - -
Vium3153g00019 2121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 429 IPR027417 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 1559 1698 IPR032675 -
Vium3153g00019 2121 Pfam Rx N-terminal domain 1033 1114 IPR041118 -
Vium3153g00019 2121 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vium3153g00019 2121 CDD RX-CC_like 2 124 IPR038005 -
Vium3153g00019 2121 Pfam NB-ARC domain 1190 1439 IPR002182 GO:0043531
Vium3153g00019 2121 Pfam NB-ARC domain 166 415 IPR002182 GO:0043531
Vium3153g00019 2121 SUPERFAMILY RNI-like 1878 2103 - -
Vium3153g00019 2121 SUPERFAMILY L domain-like 1517 1888 - -
Vium3153g00019 2121 CDD RX-CC_like 1029 1151 IPR038005 -
Vium3153g00019 2121 FunFam Probable disease resistance protein At1g63360 1439 1528 - -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 2029 2120 IPR032675 -
Vium3153g00019 2121 SUPERFAMILY L domain-like 482 958 - -
Vium3153g00019 2121 PANTHER DISEASE RESISTANCE PROTEIN RP 1064 1860 IPR044974 GO:0006952
Vium3153g00019 2121 Gene3D - 421 504 IPR036388 -
Vium3153g00019 2121 Gene3D - 1445 1528 IPR036388 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 515 667 IPR032675 -
Vium3153g00019 2121 FunFam Probable disease resistance protein At1g63360 415 504 - -
Vium3153g00019 2121 Gene3D - 147 317 IPR027417 -
Vium3153g00019 2121 Gene3D - 1173 1342 IPR027417 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 1701 1894 IPR032675 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 871 964 IPR032675 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 671 870 IPR032675 -
Vium3153g00019 2121 Gene3D Ribonuclease Inhibitor 1895 2028 IPR032675 -
Vium3153g00019 2121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1169 1453 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3153g00019 Vium-Chr3153 94883 102316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3153g00019 191 665 WRKY Transcription Factor Family AT5G45050 23.137 4.08e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3153g00019 - - vum:124833357 4248.35