Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3153g00005 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAAGAAATATGCGGTGCCAATTGTTCCAGTAGTTTGAAACCAGTATTGCAAGTTATAGATTTGAAGCTGGTGCAGTCGCAACAAGCCAACAACACCGAGAGGTACCGGTTGATTCTTTCTGACGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAACGAACTAGTTCATTCTGGAAAGTTGCAGAAAGGTTCCGTCGTTAGGCTCACACAGTTCATCTGCAACGATGTCCAGAACCGCAAGATTATTGTCATAATTGACCTAGATGTTGTAGTGGAAAAATGTGAGTTGATTGGAGAACCTGTCTCCTTACCAAAAGATGGATCTGTAGAATCTGCTACTGGTCAATCAGGAGTCACCCCTGGAAATTCACAATCTTTGAATAACCGTTCACACTCAGGCGGCATGGCTGCTAGACCGAATATGGCCATACCATCTCCAGATCATCCAAGAATGAATGCTCCTGCCAGTAGTGTTTATTCTAGTATTTCCAACTCTGGATCTAGTTATTCTAGTAATGCACCTCCTACATATCCTAAAGTAGAAACCGGAGCTAATTTGTCTAGATCAGCACCATTTACTGGATCTCATGGTGATCAGAACATGGGTATTCGTCATCCCCAATCTGAGACTTCAAGGCCCTTGTCAAACTCTTATGCTCGTGCACCTCAGCCTATGTATCGGCAACCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAAGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTGATTGAAGCTGGTAAGATATACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGATCAAGAGTTAACCCTTGATATGACATCCATCATACAACCATGCCCTGATGATGATAAATCAATTCCAAAGCAGACTTTTAATTTTCGGCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACGCCATTGTGGATATGATTGGTGTGGTGACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAGTTAACTTTGTGGGGAAACTTTTGCAACGTGGAAGGACAAAGGCTGCAAACTATTTGCGATGATGGTAAATTTCCAGTTTTGGCTATAAAAGCTGTCAGAATTAACGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTACTGTTCATAGAGCCTGATTTTCCAGAGGTTTACACACTGAAAAGATGGTTTGAAAAGGAAGGGAAGAATGTCCCAACTCTCTCTATCTCTAAAGATACATCTAGTTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCGGAAAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATTCATGAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGCGGTGAGGAGATCATTGGCGTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAAATGATGAAAGATTTGCTGAAATCATCCGGAAGGTTCTCTTCTCCGAGTATGTTTTCAAGTTGAAAGTAAAAGAGGAAACATTCAGTGATGAACAACGTGTTAAGGCAACTGTGGTTAAAGCAGAAAAGGTAAACTTTGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTGCTACCACCGTTACCAACTCATTATCCGGTAATACTGGACTGAGGAGTGTTGAAACTGGTCAAGTAATGCCACCGGCTTATAACCCAATAAAGAGTAGCACTAATAGCGGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAATATGGAAACCAATATGGCAATATTGCTTCAGCAGGTGCTCCTGGTGCATATACATCATGTACAAACTGTGGAGGTTCTGGTCATACTTCTATACTTTGCCCAAATGTTAGAAATCCGGCTGGACAGTCTTCAGGAGGGGGCTTTTCCAACAGGGTATCATATGGTGGATCAGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCAGCAACTGCATCATATGGAAGCAATACAATGCAGGGAAGATATGGAGGATATTGA 2583 0.4208 MAGSLTPGAIKEICGANCSSSLKPVLQVIDLKLVQSQQANNTERYRLILSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLTQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVSLPKDGSVESATGQSGVTPGNSQSLNNRSHSGGMAARPNMAIPSPDHPRMNAPASSVYSSISNSGSSYSSNAPPTYPKVETGANLSRSAPFTGSHGDQNMGIRHPQSETSRPLSNSYARAPQPMYRQPSPMYTNRGPIGKNEAAPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKIYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDKSIPKQTFNFRPISEIESLESNAIVDMIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDDGKFPVLAIKAVRINDFNGKSVGTIMTSLLFIEPDFPEVYTLKRWFEKEGKNVPTLSISKDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISFMKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIIGVPAKDLYYLKYEEQNDERFAEIIRKVLFSEYVFKLKVKEETFSDEQRVKATVVKAEKVNFASKSRVSLELIDKLLTGKSEGATTVTNSLSGNTGLRSVETGQVMPPAYNPIKSSTNSGRDFGMPANQVGQQYGNQYGNIASAGAPGAYTSCTNCGGSGHTSILCPNVRNPAGQSSGGGFSNRVSYGGSGGGASGECFKCHQPGHWARDCPGSSAATASYGSNTMQGRYGGY 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3153g00005 860 Gene3D - 3 117 IPR012340 -
Vium3153g00005 860 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Vium3153g00005 860 FunFam Replication protein A subunit 260 369 - -
Vium3153g00005 860 SUPERFAMILY Nucleic acid-binding proteins 261 373 IPR012340 -
Vium3153g00005 860 Pfam Zinc knuckle 824 839 IPR001878 GO:0003676|GO:0008270
Vium3153g00005 860 CDD RPA1_DBD_A 263 365 - -
Vium3153g00005 860 Gene3D - 260 370 IPR012340 -
Vium3153g00005 860 MobiDBLite consensus disorder prediction 715 736 - -
Vium3153g00005 860 Pfam Replication protein A OB domain 384 487 IPR031657 -
Vium3153g00005 860 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium3153g00005 860 MobiDBLite consensus disorder prediction 115 252 - -
Vium3153g00005 860 FunFam Replication protein A subunit 512 703 - -
Vium3153g00005 860 SUPERFAMILY Retrovirus zinc finger-like domains 809 841 IPR036875 GO:0003676|GO:0008270
Vium3153g00005 860 ProSiteProfiles Zinc finger CCHC-type profile. 825 839 IPR001878 GO:0003676|GO:0008270
Vium3153g00005 860 CDD RPA1_DBD_B 395 502 - -
Vium3153g00005 860 Gene3D - 776 848 - -
Vium3153g00005 860 SUPERFAMILY Nucleic acid-binding proteins 379 508 IPR012340 -
Vium3153g00005 860 NCBIfam replication factor-a protein 1 (rpa1) 220 701 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vium3153g00005 860 SUPERFAMILY Nucleic acid-binding proteins 525 704 IPR012340 -
Vium3153g00005 860 MobiDBLite consensus disorder prediction 167 236 - -
Vium3153g00005 860 MobiDBLite consensus disorder prediction 121 147 - -
Vium3153g00005 860 Gene3D - 512 703 IPR012340 -
Vium3153g00005 860 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Vium3153g00005 860 SMART c2hcfinal6 824 840 IPR001878 GO:0003676|GO:0008270
Vium3153g00005 860 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vium3153g00005 860 FunFam Replication protein A subunit 373 511 - -
Vium3153g00005 860 FunFam Replication protein A subunit 4 117 - -
Vium3153g00005 860 Pfam OB-fold nucleic acid binding domain 274 361 IPR004365 GO:0003676
Vium3153g00005 860 Gene3D - 373 511 IPR012340 -
Vium3153g00005 860 CDD RPA1_DBD_C 529 702 IPR047192 -
Vium3153g00005 860 Pfam Replication factor-A C terminal domain 545 694 IPR013955 -
Vium3153g00005 860 PANTHER REPLICATION FACTOR A 1, RFA1 274 694 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3153g00005 Vium-Chr3153 38903 42566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3153g00005 1 806 Core DNA Replication Machinery Family AT5G45400 50.803 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3153g00005 K07466 - gmx:100778597 1296.18