Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium314g00001 ATGTTTCTAGGTGAAGAAAAGGGATTGAGTTGGGATGAAAGGCTGCAAATTGTTCTTGATATTTCACATGGAATAGAATACCTTCATGAAGGAGCAATTCCACCTGTCATACATCGTGATTTAAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGACTCTCAAAAGAAGAGATCTTTGATGGCAGGAATTCTGGTCTGAAAGGTACATATGGCTACATGGATCCTGCATACATTTCCACAAGCAAGTTAACAACTCAGAGTGACATATACAGTTTTGGTATCATAGTTTTTGAGCTCATCACTGCCATCCACCCTCATCAAAATTTGATGGAGTATGTCAACCTTGCTGCAATGGATCATGATGGTATAGATGAGATACTTGACAAGAAACTAGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAACTTGCTAAGATTGGACACAAATGCCTGCACAAATCACCTAAGAAACGTCCCTCCATAGGTGAGGTTTCTCAGTTCATATCAAGAATAAAGCAACGGCGTCAGCGCCGTCTGACAGAAGATAACTTGTCATTTGCAAGCAACAACTTTTCTCGAGCTGTGAGTCGATTAGAAGATCGACAGGTTGAACTTAGCAGGATGTCAACGATTAGCCTAACAGAAACTCTATGA 678 0.4056 MFLGEEKGLSWDERLQIVLDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTQSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGIDEILDKKLVGKCNLEEVRQLAKIGHKCLHKSPKKRPSIGEVSQFISRIKQRRQRRLTEDNLSFASNNFSRAVSRLEDRQVELSRMSTISLTETL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium314g00001 225 PANTHER OS01G0750732 PROTEIN 4 196 - -
Vium314g00001 225 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 1 202 - -
Vium314g00001 225 SMART serkin_6 2 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium314g00001 225 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium314g00001 225 Gene3D Transferase(Phosphotransferase) domain 1 2 203 - -
Vium314g00001 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Vium314g00001 225 Pfam Protein kinase domain 7 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium314g00001 225 SUPERFAMILY Protein kinase-like (PK-like) 5 190 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium314g00001 Vium-Chr314 642 2506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium314g00001 9 180 Receptor kinase-like Gene Family AT1G16150 38.122 6.32e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium314g00001 Pkinase 6.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium314g00001 - - vum:124834470 441.039