Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3144g00006 ATGGACAGTGACCGGAGCGTGTCTGCTCCATCTCATGGGCAAGTTGACGGCACTCAGAGAGTTAAAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACTAGAGGAGGATGACATCTTACGGAAGGCAGTTGAGAAATTTAAGGGAAAGAATTGGAAAAAAATTGCGGAATGTTTCAAGGATAGGACTGATGTGCAATGCCTGCATAGGTGGCAAAAGGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGACATAATTATTGAATTGGTTAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCACGACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATTTGGGAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGACATCTGGTGTGCTTAATCAGTTTGAGCCTGTACCTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAGTGTAGTGGAGATGATAACTGTTCCAAAGGGATTAAAAGAGAAGAGATTTCGGAGTCCAGCCAAGGTTCAGCTAATGCTGTTTGCTTTCCGTCTGCTAGAGGAATGAGCAGTACTGAATTACAAACTGGAGAGGCGACTTGTAGGCCAAATGAAGAATGTAATCTTCGAAAGGATCATAGTCCAAGTCAAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATGTTAGTATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCTCAGTTCATTGAGCAACAATCACATGAACTGGGAAATTCCATAACTGGGGATCGTCATTTCAATTTACATTCCTTACCCAATGTTTCATCAATGGTCGTGGGGCAGGATTCCTCACAGTTGCATAGAGATTGTGTAGCTTCTAGTGAAATCTGTGACATGGTAAAGGCGTTGGGTGCTTCAACTTCCATGGTGCCTGCATCTTTGGGTTCTCTTAAACCAGAGCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTGTTTTCAGATTCAATAAATGATGGGTCTTTTCCCCCTGTAGATTATATTAAAGGTGAAGAAACAGTTAAATTTTCTGGATGTACTTCATTTCGTTGCCAATCTTGTAATATCCAGATATCTGAAACTGGTGGATCCTCAACTCCTCATCTAACTTGTCCTCGGTGTTCTAATAATTATCAAGGAACTTCATCCTCCCTGTCTAATCCTCCAGTACTTTCTGCACGTGATGATAGGGAGGGGCCAACTGCCAATGACAATCATTTATATGGGGAAGACGGTCAGCAGTTGGTCTCCACAGCACCTGCTAACCTCACTCATGTCAATTACATATCCAGTTCTCCCTGTGTGGATGGTATGGGTACTGTAGTAATGGAAGAACCACGTGAGGAAAACACAAATGTGCATACAGAAAAGGAGGACTCAGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGAATCCGCCAATTTATGATGTCTTCTATGAATTGTCTTACTCCTTTTAAGTTGTGGGACTCACCCTCTCATGGTGATAGTCCTGATGCATTGTTAAAAAGTGCTGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGGCACCGAGATTTGTTGTCACCACTCTCAGATAAAAGAGTTGAAAAGAAACTTGGGACTGACATGACTACCTTCACCAACAACATTTGCAGTTTGGATGTCATGTTCGATGACAATGAGACTCAGGAAACGGATATCCCTTCATTGCAAAAACAGAACAGTAGTGCATGTGTTGATGATGATAATAAAGAAAATTGCGGACAAGCTTATAAGCCAACTAAGTATGGAATTATCGATGAAAAGAACTGCTATAAAGATACTGTAGACAATTCTCAGCCTAATGTGAATCAACAGCAGCTAATGGTTGATGCCTCAGCTGCTGCCATTGAACAAGAACCTTCTGGAGTTTTGGTCGAACATGATGTGAATGACTTGACGCTGTCTCCTGATCAAGTTGGTTTAAAATCAAACAGAGGTCTTGTTACAAGTACTAAAACACCCAAAAGCATGAACAGAACCTTGGAAGAAGTTCCCAATCAGAACGGCCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGGATTAATTCTAATTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAACCTTTCTGTTGCTGTTACTCGTGTACAAGCTCCAGCGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCCGCATGGAAATCTCCTTGGTTTTTCAACGCTTTTCTATCTAGCCCCAGACTTGATAACGAACTTACAGTTGAGGATTTTGGGTATTTAATGAGCCCTGGTGATAGAAGCTATGATGCAATAGGGTTGTTAAAACAGATCAGTGAACATACTGCTGCTACATATGCCAATGCTCAAGAGGTTTTGGTAAATGAAACTCCCAAGGCATTACAGAAAGATGCATCTGGAAACGACAAGGATAACTGCCATGGTTCTCCCAATCAGCCTGGGAACCATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGTACACTTGACTTTAGCGAATGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTCCAAAAGCCCTTCTTCGTATCTGTTGAAAGGTTGTAGATGA 2982 0.4108 MDSDRSVSAPSHGQVDGTQRVKALHGRTTGPTRRSTKGQWTLEEDDILRKAVEKFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDDIIIELVNKNGAKKWSSLARHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGVLNQFEPVPHVGNSNQSTRLQCSGDDNCSKGIKREEISESSQGSANAVCFPSARGMSSTELQTGEATCRPNEECNLRKDHSPSQASCSEPYYVSIDDVSICIPEISHQEACTSQFIEQQSHELGNSITGDRHFNLHSLPNVSSMVVGQDSSQLHRDCVASSEICDMVKALGASTSMVPASLGSLKPEHVLISDDECCRVLFSDSINDGSFPPVDYIKGEETVKFSGCTSFRCQSCNIQISETGGSSTPHLTCPRCSNNYQGTSSSLSNPPVLSARDDREGPTANDNHLYGEDGQQLVSTAPANLTHVNYISSSPCVDGMGTVVMEEPREENTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVEKKLGTDMTTFTNNICSLDVMFDDNETQETDIPSLQKQNSSACVDDDNKENCGQAYKPTKYGIIDEKNCYKDTVDNSQPNVNQQQLMVDASAAAIEQEPSGVLVEHDVNDLTLSPDQVGLKSNRGLVTSTKTPKSMNRTLEEVPNQNGHLKLSSKNPCSRINSNSPCVRAKEHENLSVAVTRVQAPADNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNAFLSSPRLDNELTVEDFGYLMSPGDRSYDAIGLLKQISEHTAATYANAQEVLVNETPKALQKDASGNDKDNCHGSPNQPGNHSQLASNALIERRTLDFSECGTPSKGDDNKSSAISSKSPSSYLLKGCR 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3144g00006 993 CDD SANT 91 135 IPR001005 -
Vium3144g00006 993 FunFam Transcriptional activator Myb isoform A 89 141 - -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 1 15 - -
Vium3144g00006 993 Pfam Myb-like DNA-binding domain 40 97 - -
Vium3144g00006 993 Gene3D - 36 88 - -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 1 38 - -
Vium3144g00006 993 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Vium3144g00006 993 PANTHER MYB PROTEIN-RELATED 37 122 - -
Vium3144g00006 993 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 969 987 - -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 962 993 - -
Vium3144g00006 993 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Vium3144g00006 993 CDD SANT 40 83 IPR001005 -
Vium3144g00006 993 Gene3D - 142 203 - -
Vium3144g00006 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Vium3144g00006 993 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Vium3144g00006 993 SUPERFAMILY Homeodomain-like 35 98 IPR009057 -
Vium3144g00006 993 Gene3D - 89 140 - -
Vium3144g00006 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 924 947 - -
Vium3144g00006 993 FunFam Transcriptional activator Myb isoform A 36 88 - -
Vium3144g00006 993 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Vium3144g00006 993 FunFam Transcription factor MYB3R-2 142 204 - -
Vium3144g00006 993 SMART sant 36 85 IPR001005 -
Vium3144g00006 993 SMART sant 88 137 IPR001005 -
Vium3144g00006 993 SMART sant 140 188 IPR001005 -
Vium3144g00006 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Vium3144g00006 993 MobiDBLite consensus disorder prediction 457 488 - -
Vium3144g00006 993 CDD SANT 143 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3144g00006 Vium-Chr3144 46322 54242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3144g00006 5 993 MYB Transcription Factor Family AT4G32730 41.878 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3144g00006 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3144g00006 - K09420 gmx:100794559 1506.5