Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3144g00004 ATGGTATGCGGGAGTTGTGTAAGGTCTTTTTTGGTTGTTCAAGCTGGAACCTTCGCCAACAGAGTGAGAATCAACGGATTTGGGAGGAGTTTGCGGCTAGTCAGTGGTTTTTCTTCGATTGGTGAATACAAGACAATCACAGGGATGATGGTTGATACGGGTTCTATGTCAAGGGCTGGACCCCTTGTTGATATGATGCCTGAGAAAGATGATGATGGTCGGTTTGCCAGTGGAGGATGGAAATGTGAAGATGGAAGGCTTAGCTGTGGGTATTCAAGTTTTAGGGGGAAGAGAGCAACAATGGAAGATTTTTATGATATCAAGACATTGAAGATTGGTGACCAATCAGTATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGAACATCTCTTTGATAATCTCTTGAAGCATCCAAAATTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGACGCTAACTTTCTGGATGCCGAAAAGGACACTTTCAGGGATGATGGATCTACAGCTTCGACAGCAGTCTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGATTCTAGGACCATAATATCAAAAGCTGGTAAAGCAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAAAGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTAGGAGGGGTTCTAGCAATGTCTCGGGCCTTTGGAAACCGTATGTTGAAGCAGTTTGTTGTAGCAGAACCTGAGATCCAGGACCAGCAGATGGATGAACAAATTGAACTTCTTATTCTTGCAAGTGATGGACTCTGGGATGTGGTACAGAACGATGATGCTGTTTCTCTTGCCCGCACAGAAGAGGAGCCCGAGGCCGCTGCTCGGAAGTTAACAGAAGCAGCATTTTCCCGAGGGAGTGCTGATAACATTACATGCATTGTGGTGCGATTCCATCATGATAAAAAGGACATAGCTAAACCTGACAAAGCAGAATCAGCTAGTGTTCAGCGTGAGTAG 1068 0.4391 MVCGSCVRSFLVVQAGTFANRVRINGFGRSLRLVSGFSSIGEYKTITGMMVDTGSMSRAGPLVDMMPEKDDDGRFASGGWKCEDGRLSCGYSSFRGKRATMEDFYDIKTLKIGDQSVCLFGIFDGHGGSRAAEYLKEHLFDNLLKHPKFLTDAKLAISETYQQTDANFLDAEKDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQQMDEQIELLILASDGLWDVVQNDDAVSLARTEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHDKKDIAKPDKAESASVQRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3144g00004 355 ProSiteProfiles PPM-type phosphatase domain profile. 88 334 IPR001932 -
Vium3144g00004 355 Gene3D - 79 355 IPR036457 -
Vium3144g00004 355 SMART PP2C_SIG_2 70 334 IPR001932 -
Vium3144g00004 355 CDD PP2Cc 88 334 IPR001932 -
Vium3144g00004 355 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Vium3144g00004 355 PANTHER PROTEIN PHOSPHATASE 72 334 IPR015655 GO:0004722|GO:0006470
Vium3144g00004 355 SMART PP2C_4 78 332 IPR001932 -
Vium3144g00004 355 Pfam Protein phosphatase 2C 90 327 IPR001932 -
Vium3144g00004 355 FunFam Probable protein phosphatase 2C 76 80 340 - -
Vium3144g00004 355 SUPERFAMILY PP2C-like 85 336 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3144g00004 Vium-Chr3144 15945 24939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3144g00004 1 343 PP2C-type Phosphatase Gene Family AT5G53140 69.722 6.70e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3144g00004 K17506 - gmx:100805795 632.098