Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3142g00005 ATGGAGTGGAGGCGTCGGACCAAGAAGCAGGCTCAGGCTCAGGCTCAGCCGCGGTTGCAGCGCCTCAACGCCAAAAAGGGCTTTAATTACCAACCACCACCGTCTCCGCCGTCTCCTTCTTCAACCTCTTCTTCCTCGCATTTCGATCGCCAAACCAGCTTCCGCCTATTCGGCATCGAGGGCGAGTTCGACCGCATCTTCCAGACCTTGGGTCTGTCCGGCCCGGAAGACTTCGCCATCCCAACAGCAGACTGGGAAGCCCGCAAGGCCCGCGTTGCTTCTTCCAAAGCCCCCGGGCCCACCCCTACCCCTAACGCGCTTATCCACTCTTCTACCGAGATCCACCCTCTTTCCGTCACCACTACTTCTGCGACTACCCTCCAAGACGATGTCGATTCAGTTCACGTTTCCGTTATGGGTTCCTCCCCTTGGTCCTCCGGGGAGCATGACGCGGGTAGGGGTAGTGTCGGCAGGTTGAGGAATGGAGAAAGGAGCGTGCTTTTCACCGATTCAGGTTCCTTCACCACTTCCCACGATGATGACAGTGACATTGGCGGCGAGAGGGTTAGTTCGGTTTCTAATTCCGCCGCCCCGGATGAGCTGGTTGTGCCTTTTGTTTCCTCCTTTTCCTTTGAGTGGTTCAGACAGACTTTCTCATCCTGGCAAAAAGGTGACGTCTTGGGAAATGGGTCTTTCGGGACCGTCTATGAAGGCTTCACTGATGAGGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTAATCAGGGAAAACAGAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTTGAGCATAAAAACATAGTTCGATATTATGGCTCGGACAAGGACAAAAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGATCATTATCAAGTCTCTATCAAAAATATCGTTTAAACGATTCCCAAGTTTCTGCATACACAAGGCAGATTTTATGTGGCTTGAAGTATCTTCATGATCATAATGTGGTCCACAGGGACATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAGATCAAGCAAAGGCTCCCCTTACTGGATGGCCCCTGAGGTTGTTAACTTAAGGGACCAAAGTGGTTACGGGTTAGCCGCCGACATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACACGCCAGCCTCCTTATTCGGATTTGGAAGGAATGCAAGCATTATTTCGGATTGGCAAGGGTGAACTTCCAAGCATTCCGGATTATTTATCTAAGGATGCCCAAGATTTCATTCGTGAATGCTTACAAATTAACCCAAATAAACGTCCAACTGCAGCTCAGCTATTGGATCACCCATTTCTAAGGAGAACATTACTGTCTCCCTTAAGTTTTGCTTCTCCTCAAAGGAAAATGTATCGGTCATAA 1488 0.4832 MEWRRRTKKQAQAQAQPRLQRLNAKKGFNYQPPPSPPSPSSTSSSSHFDRQTSFRLFGIEGEFDRIFQTLGLSGPEDFAIPTADWEARKARVASSKAPGPTPTPNALIHSSTEIHPLSVTTTSATTLQDDVDSVHVSVMGSSPWSSGEHDAGRGSVGRLRNGERSVLFTDSGSFTTSHDDDSDIGGERVSSVSNSAAPDELVVPFVSSFSFEWFRQTFSSWQKGDVLGNGSFGTVYEGFTDEGFFFAVKEVSLLDEGNQGKQSIFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLSSLYQKYRLNDSQVSAYTRQILCGLKYLHDHNVVHRDIKCANILVDVSGAVKLADFGLAKATKFNDVRSSKGSPYWMAPEVVNLRDQSGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGKGELPSIPDYLSKDAQDFIRECLQINPNKRPTAAQLLDHPFLRRTLLSPLSFASPQRKMYRS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3142g00005 495 ProSiteProfiles Protein kinase domain profile. 221 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3142g00005 495 SUPERFAMILY Protein kinase-like (PK-like) 201 489 IPR011009 -
Vium3142g00005 495 SMART serkin_6 221 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3142g00005 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Vium3142g00005 495 FunFam Mitogen-activated protein kinase 1, putative, expressed 219 488 - -
Vium3142g00005 495 MobiDBLite consensus disorder prediction 1 49 - -
Vium3142g00005 495 MobiDBLite consensus disorder prediction 170 191 - -
Vium3142g00005 495 Gene3D Transferase(Phosphotransferase) domain 1 219 493 - -
Vium3142g00005 495 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 479 - -
Vium3142g00005 495 PRINTS Tyrosine kinase catalytic domain signature 401 423 IPR001245 GO:0004672|GO:0006468
Vium3142g00005 495 PRINTS Tyrosine kinase catalytic domain signature 334 352 IPR001245 GO:0004672|GO:0006468
Vium3142g00005 495 PRINTS Tyrosine kinase catalytic domain signature 444 466 IPR001245 GO:0004672|GO:0006468
Vium3142g00005 495 PRINTS Tyrosine kinase catalytic domain signature 299 312 IPR001245 GO:0004672|GO:0006468
Vium3142g00005 495 Pfam Protein kinase domain 222 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3142g00005 495 ProSitePatterns Protein kinases ATP-binding region signature. 227 249 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3142g00005 Vium-Chr3142 60544 65424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3142g00005 18 94 MAP Kinase Kinase Kinase AT4G08500 39.535 9.95e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium3142g00005 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3142g00005 - K13414 gmx:100820552 737.258