Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3139g00001 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGTTTTATTCCACCCAGAACCCATATGAACCCTTCAAGCACGCACCTACTTGAGCCACTGTGTCTTCACCATGGTCTCAGTCCGGTTGCTGCTGCCACTACAATTCCACCCAACACCTATGACCACAACATGGTTGGGGACGTTTTCTTCCCTCGTGCCTTCACTCACTTTGCCCATCATCATGACTATTCCTCTTCTTCTGGTGTCAACCCTACCAATGCTGCCACTGCTGCTGTCTCGGATCATGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTCGGTTTTGATTCCGGGAACAACAGGTGGCCAAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTGCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGTATATGTATATACTAACTTCTGAAAAAAAGGAAGAAAACCACTGTTTTTGCTTTCTGGTTTGTTTTCAGACTCAGAACGAGTTGGGGAAATGCATAGTGTGA 552 0.4746 MGDPYGLPEDLRRFIPPRTHMNPSSTHLLEPLCLHHGLSPVAAATTIPPNTYDHNMVGDVFFPRAFTHFAHHHDYSSSSGVNPTNAATAAVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRYMYILTSEKKEENHCFCFLVCFQTQNELGKCIV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3139g00001 183 Gene3D - 116 165 - -
Vium3139g00001 183 PANTHER FI21293P1 73 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3139g00001 Vium-Chr3139 1837 3032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3139g00001 115 152 Trihelix Transcription Factor Family AT5G03680 78.947 1.18e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3139g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3139g00001 - - vum:124833330 395.971