Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3138g00006 ATGCAGACACAGTTCTTCTTTCCTCATTCCCTTCCTAAACAAAAAAAAAACATGTCTTCTTCCTCCAATGAACTCATCCTCACTAGCTCCCCTGACGGGCCAATCATGGTCTACGAGACTGTTAGCCGCACCGCCGTGACACGGTTCTCCAGCAGCCGATCTCCGTGTCGCGGCCTGACCATGGTGGGCCGGAGATTGTTGGCAGCCTCACACGTATCATCAGACACGGGTGCAGGCTCCATCAACATCTACAATTGGCACGGTTCTTCTGTGTTTCGTAACTTCCCCGTGCCAGAACCCATTGCCCCTCTCATTGCAACACCCGATGGAGCATTTCTCTTCGGTGGTGGCATCTCAGGGAGTGTTATATCTCTTTCAGGTTCTTCTGGGGATGTCATCAGATCAACTGTTGTTCACTCAAGTCCAGTTTCCAGTCTTCATCTGAGCGACGATGGGTCACTTGTTATCTCAGGCAGTGAAGATGGAACAGTTGTTGTTGTCCCTAGCTTCAAGATCGTTGCAGAGGGTTCCTTGGAGGAGAATGTGGAAGACTTGATCTTGCACAAATGGAAGGCGCATTCTGATTCCGTGACTGCTTTCAAGTCTGTGATGGGTACTTTGGTTTCTTGCTCATTAGACCGAACATGCAAGTTTTGGAATCTGGAAAACTGTGGGGTCCTTATGCAGACTGTGACATTACCTTGTTCCGTTTCTGGGGTTGCCGTAGATTCATCGGGGTCAACGTTTTACGCTGGTGGTGCAGATGGGTTTGTTTATAAGGTTGAAAATAGAAAAGTAGTGGGTGATAAGGGTTGTAAGGTGAGAAAATGGGGTCAAAAGCATAGTGGGGGGATTGTGTCATTGGGTTTGGTGAAGGAAGAGAGGAATGTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTTGTGATGGTTTTTGGGGATGAATTGATAACCATTAGTGACATGATTGTGATAAAGGGAAATGGTGGTGGGTTTGGAGTTGGAAAGGGAAATGATGTTGCAGTTGGTGAAGAGAATGGGTCCTTCACTTCTTCTAGGTTATGTGATGAAGAGATTCTTAGGACAATGAATCAAATGACAGCCCTTGAAGAGGTCAAGGATGTTGTATTACAAGACAGGAAAAAGGCCATTGAAATGTTGGAATCTGTGATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACAAAAGCCATTGAAGAAGAAAAAGAAGAAATGGATGAAGAAGACAAAGATGATAAACATGAAGAAGAACACGAGAAAGATGATAAGAAGGAAGGGAACTAG 1341 0.4541 MQTQFFFPHSLPKQKKNMSSSSNELILTSSPDGPIMVYETVSRTAVTRFSSSRSPCRGLTMVGRRLLAASHVSSDTGAGSINIYNWHGSSVFRNFPVPEPIAPLIATPDGAFLFGGGISGSVISLSGSSGDVIRSTVVHSSPVSSLHLSDDGSLVISGSEDGTVVVVPSFKIVAEGSLEENVEDLILHKWKAHSDSVTAFKSVMGTLVSCSLDRTCKFWNLENCGVLMQTVTLPCSVSGVAVDSSGSTFYAGGADGFVYKVENRKVVGDKGCKVRKWGQKHSGGIVSLGLVKEERNVVSAAEDGSVWMWDVEKGEVVMVFGDELITISDMIVIKGNGGGFGVGKGNDVAVGEENGSFTSSRLCDEEILRTMNQMTALEEVKDVVLQDRKKAIEMLESVIEMYERLLKLILKEATKAIEEEKEEMDEEDKDDKHEEEHEKDDKKEGN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3138g00006 446 Coils Coil 392 430 - -
Vium3138g00006 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 166 IPR001680 GO:0005515
Vium3138g00006 446 PANTHER WD-REPEAT PROTEIN 18 23 414 IPR045227 -
Vium3138g00006 446 MobiDBLite consensus disorder prediction 418 446 - -
Vium3138g00006 446 ProSitePatterns Trp-Asp (WD) repeats signature. 297 311 IPR019775 -
Vium3138g00006 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 315 - -
Vium3138g00006 446 SUPERFAMILY WD40 repeat-like 20 331 IPR036322 GO:0005515
Vium3138g00006 446 Gene3D - 8 166 IPR015943 GO:0005515
Vium3138g00006 446 Gene3D - 179 333 IPR015943 GO:0005515
Vium3138g00006 446 SMART WD40_4 129 168 IPR001680 GO:0005515
Vium3138g00006 446 SMART WD40_4 270 310 IPR001680 GO:0005515
Vium3138g00006 446 SMART WD40_4 224 262 IPR001680 GO:0005515
Vium3138g00006 446 SMART WD40_4 183 220 IPR001680 GO:0005515
Vium3138g00006 446 MobiDBLite consensus disorder prediction 432 446 - -
Vium3138g00006 446 Pfam WD domain, G-beta repeat 133 166 IPR001680 GO:0005515
Vium3138g00006 446 Pfam WD domain, G-beta repeat 187 220 IPR001680 GO:0005515
Vium3138g00006 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3138g00006 116 320 U-box Gene Family AT1G04510 27.488 7.82e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3138g00006 K14829 - gmx:100785191 505.368