Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3138g00005 ATGCGGTTAATCCATGTTCTTCTGTTAGGGCTTTTGGCTTTGAATTGCGTTCAAGTTTTTGAATCCAATGCTCAACTCATACCACAAGATGAAGTGAAAGTACTCCAAACAATATCTGATAAGCTAGAAAACTTGAACTGGACAGTTACAGAGCGTTCCTGCACAGAGAATGAAGGGTTTAATGGCAAGATGAATATAAACGGTGGTGACATTCAGAGAAATGTCACATGCGATTGCAACTTCCAAAATAACACAGTTTGCCATGTTGATAACATCTTTCTCAAGGGTCAAAATATATCTGGAGTTTTTCCCAGTGAATTTGGAAATCTCACCCATCTGAAAGTGCTTGATCTTTCCCGCAACTATCTCAACGGCTCGCTTCCAAAAAGTTTTCCTCCCAACTCTTCGCTGATCAATTTGTCCCTTCTGGGAAACCGACTAAGTGGTCAAATTCCCACAGAAATTGGTGATATTGCTGGTCTGCAGGAACTGGTCTTGGAATGTAACCAACTTGAAGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAATTTGACGAGACTGCTTCTTTCTGCAAATAATTTCACAGGGACCATACCAGAAACATTTAGCGAACTTCGAAATCTGACTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACCAATACCCAGTTTCATTGGGAACTGGACCCAACTTGACAGACTGGATTTGCAGGGAACAAATATGGAAGGCCCAATTCCTTCCACTATATCTCAGTTGAAACTTTTGACTGAATTGAGAATAACTGATTTGAAAGGACCAACTATGGATTTTCCTGATCTGGAGGAGTTGAAAAACTTGGAACGACTGGCATTAAGAAATTGCTTAATCACGGGTCGTATTCCAGATTACTTCAGTGAAATGACAAGTTTAACTACTTTGGACCTAAGCTTCAACATGTTAACTGGTCAAGTCCCAGAAGCAATACAAAATATGGAAAAGCTAGATTTCTTGTTTCTGACTAATAATTCTCTGAGTGGAGAAATTCAGGACTGGATACTGAGCTTCAAAGAAAACATAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAGCTGTCAGCTCTCGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCGGTGACTACAGCTTCAACTTTTTGTTTGAAGAGGAATCTTCCTTGTGCAGGAGAACCCCAGTATAAGTCATTGTTCATAAACTGTGGAGGAGCTGAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTCAGCCGAAATGGCATTTCAAACTTTGATCTTAGAAATGATGAACATTGGGCCTATAGCAGCACAGGAGTATTTATGGGAAACAATGATGCAGATTTTGTAGCAGAAAATACATTTTCTTTGAATATTAGTGGCCCAGAATATTACCAAAACGCTCGCCTTTCTCCTATGTCGCTTAACTACTATGGCTTTTGTTTGCGAAACGGACAATATAAAGTGAAGCTCCATTTTGCTGAGATAATGTATACTGATGATCAAACTTTTAGAAGTTTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTGTTAGATATTTGAAAGACTTTAACATTGCGGAAGAGGCTGGTGGAGTTGGAAAGGGCATCACTAGGGAATATGATGTTGATGTTGATGATGGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTTCCATTCCTGATAGAGGTGTATATGGACCTCTGATATCTGCTATTGAGATGATACCGAACTTTGAGAATCCTTCGAAAGGGCTGTTTGCTGGAGTCATTGTTGGAATTGTTGCTGCATCATGTGGGCTTGTCATATTGATACTGGTTGTCCTTTGGAAGATGGGTCTTCTTTGTAGGAAAGATACAACGGATAAAGAACTTCTAGATATGAAAACGGGCTACTACAGCTTAAGACAAATTAAAGCAGCTACTAATAATTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGCTGCCAGACGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAGGGGAACCGAGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAACATCCTAATCTGGTGAAGCTATATGGCTGTTGCATTGAAGGCAACCAGTTGCTACTGATATACGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTTGGTGGAGAAGAAGTGAAGCTACACTTAGACTGGCCTACAAGAATGAAGATCTGTGTGGGGATAGCAAGGGGATTGGCTTATCTTCACGAAGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAGGGAACTGAATGCCAAGATCTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAAGAAAATACTCATATCAGTACACGCATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGAGGGGCTATTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACGAAATACAGACCAAAGGAAGAGTTTGTATACCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAGGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAATTACTCTCAAGAGGAAGCCATGAGAATGCTGAGCTTGGCACTGTTGTGCACCAATCCTTCTCCCACTCTTAGACCAACCATGTCTTCTGTTGTGAGAATGCTTGAAGGAAAAATTCCAATCCAAGCACCTATAATCAAGCGCAGTGAGAACAACCAAGATTTAAGATTTAAAGCTTTTGAGTTGCTATCACAAGACAGCCAAACTCATGTTTCATCTGCGTACTCTCAAGAAAGTATGAAGCAAGAAAACAAATCCGAAGATGGACCATGGCTTGACTCCTCCCTATATCTTCAAACTGGAGATGGTCATTCTTCAAGCAGTAAACTAATCTAA 3027 0.4054 MRLIHVLLLGLLALNCVQVFESNAQLIPQDEVKVLQTISDKLENLNWTVTERSCTENEGFNGKMNINGGDIQRNVTCDCNFQNNTVCHVDNIFLKGQNISGVFPSEFGNLTHLKVLDLSRNYLNGSLPKSFPPNSSLINLSLLGNRLSGQIPTEIGDIAGLQELVLECNQLEGPLPPSLGNLSNLTRLLLSANNFTGTIPETFSELRNLTDFRIDGSSLSGPIPSFIGNWTQLDRLDLQGTNMEGPIPSTISQLKLLTELRITDLKGPTMDFPDLEELKNLERLALRNCLITGRIPDYFSEMTSLTTLDLSFNMLTGQVPEAIQNMEKLDFLFLTNNSLSGEIQDWILSFKENIDLSYNNFTKSSASSCQLSDVNLASSHSSSAVTTASTFCLKRNLPCAGEPQYKSLFINCGGAEGEFEGNNYVGDLSRNGISNFDLRNDEHWAYSSTGVFMGNNDADFVAENTFSLNISGPEYYQNARLSPMSLNYYGFCLRNGQYKVKLHFAEIMYTDDQTFRSLGRRIFDVSVQGVRYLKDFNIAEEAGGVGKGITREYDVDVDDGTLEIHLYWAGKGTTSIPDRGVYGPLISAIEMIPNFENPSKGLFAGVIVGIVAASCGLVILILVVLWKMGLLCRKDTTDKELLDMKTGYYSLRQIKAATNNFDPANKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGGEEVKLHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDRELNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSQEEAMRMLSLALLCTNPSPTLRPTMSSVVRMLEGKIPIQAPIIKRSENNQDLRFKAFELLSQDSQTHVSSAYSQESMKQENKSEDGPWLDSSLYLQTGDGHSSSSKLI 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3138g00005 1008 Gene3D Ribonuclease Inhibitor 268 393 IPR032675 -
Vium3138g00005 1008 SUPERFAMILY Protein kinase-like (PK-like) 644 933 IPR011009 -
Vium3138g00005 1008 SMART serkin_6 661 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3138g00005 1008 SUPERFAMILY L domain-like 66 366 - -
Vium3138g00005 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 964 - -
Vium3138g00005 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Vium3138g00005 1008 Gene3D Phosphorylase Kinase; domain 1 628 736 - -
Vium3138g00005 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Vium3138g00005 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 31 198 - -
Vium3138g00005 1008 Gene3D - 407 594 - -
Vium3138g00005 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 736 - -
Vium3138g00005 1008 Gene3D Ribonuclease Inhibitor 63 267 IPR032675 -
Vium3138g00005 1008 Gene3D Transferase(Phosphotransferase) domain 1 737 954 - -
Vium3138g00005 1008 Pfam Protein tyrosine and serine/threonine kinase 665 931 IPR001245 GO:0004672|GO:0006468
Vium3138g00005 1008 ProSiteProfiles Protein kinase domain profile. 661 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3138g00005 1008 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Vium3138g00005 1008 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Vium3138g00005 1008 Pfam Malectin domain 407 589 IPR021720 -
Vium3138g00005 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Vium3138g00005 1008 MobiDBLite consensus disorder prediction 968 1008 - -
Vium3138g00005 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 266 - -
Vium3138g00005 1008 CDD STKc_IRAK 667 934 - -
Vium3138g00005 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 267 390 - -
Vium3138g00005 1008 SMART LRR_typ_2 182 205 IPR003591 -
Vium3138g00005 1008 SMART LRR_typ_2 302 325 IPR003591 -
Vium3138g00005 1008 SMART LRR_typ_2 110 133 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3138g00005 Vium-Chr3138 122400 133531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3138g00005 9 993 Receptor kinase-like Gene Family AT1G53440 60.643 0.0 1202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3138g00005 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3138g00005 - - gmx:100817368 1664.82