Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3137g00006 ATGGGAGGTTCATCGGAGACGAAGTTCTTGCAGGACCTGTTGTTGTACGCTGCGAGCGCGGCGTTGAGTTGCTTGGTGTTGTTCGCGGGACTCAGACACCTCGATCCTAATCGCGAAGCTTCCAAAAAGGTTCTTGAGCACAAGAAAGAGATTGCAAAGCGTCTAGGTCGCCCCCTTATTCAGACTAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAATTCTATTGGGGGACTGGAAACCATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGATATGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTTATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCGGTATTTAGCCTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGCCGTACAACTGATCATGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGTTTTACTACTGATAAGAATGCTCAAGTTATGGTCCTTGCTGCTACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATCGGAATTCCTGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGAGAACATAGAGTTTGGTCATATAGCAGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTGCTAGATGAAGAGAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCATTGCCACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATACGCTGGATTTAGCCTTCAGTCACCTTCAAGATGGTCGGTGCCTGGTGATTCAGGTGTCAGATCCGTCAACATTCTATGA 1113 0.4447 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKVLEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDMFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDKNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEENIEFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKAIATSQKTKVAASEYAGFSLQSPSRWSVPGDSGVRSVNIL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3137g00006 370 Pfam AAA+ lid domain 275 310 IPR041569 -
Vium3137g00006 370 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vium3137g00006 370 CDD RecA-like_ATAD1 85 250 - -
Vium3137g00006 370 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Vium3137g00006 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Vium3137g00006 370 Gene3D - 253 333 - -
Vium3137g00006 370 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vium3137g00006 370 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 344 - -
Vium3137g00006 370 SMART AAA_5 118 254 IPR003593 GO:0016887
Vium3137g00006 370 Gene3D - 80 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3137g00006 Vium-Chr3137 21388 28078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3137g00006 39 318 Calmodulin-binding Proteins AT3G56690 32.042 7.80e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3137g00006 K22530 - gmx:100796908 684.871