Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3137g00001 ATGGCAGCTTTTACACCAATTGCTCTACAGTACTCATCTACATCATCTTTGCATTCTTTGCTCCCTTCTTTAGAAGCTTCACGTGATCATAATTCGTGGTGGGGGAAAGTGAGATCATACAAATCCGCAGGAAAAAGACCACTTCAACAAAGGGGTTTGACAATCCAGAGTGCAGCCACAAAACCAGCAAAGTCGCCAGCTGAAGAAGACTGGAAGGTTAAGCGAGAATATCTGGTGCAAAAAAGGGTAAGAAGTGTGGATGCAAAGGAAGCTCTGCGGCTTCAAAAAGAAAATAATTTTGTGATTCTCGACGTAAGGCCAGAAGCAGAGTTCAAAGAGGCTCATCCTCCAGATGCTATCAATGTGCAAATATACAGGCTTATAAAGGAGTGGACAGCATGGGACATTGCAAGACGTGCAGCATTTGCTTTTTTTGGTATTTTTTCCGGGACTGAAGAGAACCCTGAGTTCATCCAGAGTGTTGAAGCAAAGTTGGATAAAAATGCAAAGATAATAGTAGCTTGCTCAGCTGGAGGTACATTGAAACCATCACAAAATCTGCCCGAAGGTCAACAATCAAGGTCTCTCATAGCAGCTTACTTGCTGGTCCTTAATGGATTTTCCAATGTCTTCCATCTTGAAGGTGGTCTTTACTCGTGGTTTAAAGAGGATCTGCCAAGTGTTTCAGAGGAGTAA 696 0.4282 MAAFTPIALQYSSTSSLHSLLPSLEASRDHNSWWGKVRSYKSAGKRPLQQRGLTIQSAATKPAKSPAEEDWKVKREYLVQKRVRSVDAKEALRLQKENNFVILDVRPEAEFKEAHPPDAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIQSVEAKLDKNAKIIVACSAGGTLKPSQNLPEGQQSRSLIAAYLLVLNGFSNVFHLEGGLYSWFKEDLPSVSEE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3137g00001 231 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 82 226 IPR036873 -
Vium3137g00001 231 CDD RHOD 90 220 - -
Vium3137g00001 231 Gene3D - 81 230 IPR036873 -
Vium3137g00001 231 ProSiteProfiles Rhodanese domain profile. 96 229 IPR001763 -
Vium3137g00001 231 FunFam Rhodanese-like domain-containing protein 14, chloroplastic 70 228 - -
Vium3137g00001 231 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 29 230 IPR043186 -
Vium3137g00001 231 SMART rhod_4 86 226 IPR001763 -
Vium3137g00001 231 MobiDBLite consensus disorder prediction 48 67 - -
Vium3137g00001 231 Pfam Rhodanese-like domain 88 221 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3137g00001 Vium-Chr3137 648 3253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3137g00001 1 226 Sulfurtransferasese or Rhodanese AT4G27700 67.699 8.67e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3137g00001 - - gmx:100788147 406.371