Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3133g00016 ATGGATTGGGTTCGTGGAGACGCCGTCGGTAGAGGAGGCTTCGCCACCGTTAGTTTAGTCATTCCGACTACCAATCCCTCTCGGTTTCCGTCTTTAACAGCCGTCAAGTCCTCCCAGACACTCACCTCTTGTTGGCTCAAGAACGAGAAACACGTGCTCGATCACCTAGGTTCTTGTCCGAGAATCATTCGCTGCTTCGGAGATGACTACAGTTTCGAGAATGGTGTTGAGTACTACAATTTGTTCCTCGAATATGCCACCGCCGGGAGTCTCGCAGACGAGGTAAACAATTGCGGAGGCCGGATTCCCGAGCCTCAGGTTCGGCGTTATACGAGGTCCATCGTGGAAGGTTTGAATCACATACATCAAAATGGGTTTGTCCACTGCGACATAAAGCTTCAAAACATCCTCGTACTCGACGACGGGGAAATCAAGATTGCAGATTTCGGTCTGGCGAAAGAGGCAGGGGAGATAAAACAGAGGAAGAGTGAATGCAGGGGGACTCCGCTGTTTATGTCGCCGGAGCAAGTGATCGATGGTGAGTGTGAGTCGCCCGCAGATATATGGGCTCTGGGGTGCGCAGTTGTGGAGATGGTTACCGGGAAACCGGCGTGGAAGGTGGAGAAGGGGTCGAGTATGTGGTCGTTGATGCTTCGAATTGGGGTGGGAGAAGAGACTCCCGAGATACCTGAGAATTTGTCGATAGAAGGGAAGGATTTTATCGGGAAGTGTTTTGTTAAGGATCCTAGAAAGAGGTGGAGTGCGGAGATGCTTTTGAAACACCCTTTTGTTTCTGATGGCACTGTTTCATTTAAGCGCGTTCACGAATCGCCCAGAAGTCACTTCGATTTCCCCGACTGGGTTTCTAGTACGACTTCTTCACTTCCCAGCTCGCCGGAATCTCAATCGCCATGGAATTTTGACGAGTCCCGTTCGGAAGGTTTCTGCTCGCCGGAGGACCGGCTCCGTCAGATATCAACCGTTGATCGGCCAGCGAATTGGTCGGAATCAGATGGTTGGAGTAGTGTTAGGTGA 1035 0.513 MDWVRGDAVGRGGFATVSLVIPTTNPSRFPSLTAVKSSQTLTSCWLKNEKHVLDHLGSCPRIIRCFGDDYSFENGVEYYNLFLEYATAGSLADEVNNCGGRIPEPQVRRYTRSIVEGLNHIHQNGFVHCDIKLQNILVLDDGEIKIADFGLAKEAGEIKQRKSECRGTPLFMSPEQVIDGECESPADIWALGCAVVEMVTGKPAWKVEKGSSMWSLMLRIGVGEETPEIPENLSIEGKDFIGKCFVKDPRKRWSAEMLLKHPFVSDGTVSFKRVHESPRSHFDFPDWVSSTTSSLPSSPESQSPWNFDESRSEGFCSPEDRLRQISTVDRPANWSESDGWSSVR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3133g00016 344 MobiDBLite consensus disorder prediction 293 344 - -
Vium3133g00016 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
Vium3133g00016 344 CDD STKc_MAPKKK 2 264 - -
Vium3133g00016 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3133g00016 344 MobiDBLite consensus disorder prediction 293 310 - -
Vium3133g00016 344 FunFam Mitogen-activated protein kinase kinase kinase 17 2 291 - -
Vium3133g00016 344 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Vium3133g00016 344 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Vium3133g00016 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vium3133g00016 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3133g00016 344 MobiDBLite consensus disorder prediction 328 344 - -
Vium3133g00016 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vium3133g00016 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3133g00016 Vium-Chr3133 166632 168063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3133g00016 1 344 MAP Kinase Kinase Kinase AT4G36950 51.852 6.04e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium3133g00016 Pkinase 6.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3133g00016 - - gmx:100798607 577.785